PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn098161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 320aa MW: 35480 Da PI: 5.2875 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.2 | 6.5e-12 | 29 | 54 | 1 | 26 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 +prlrWt +LH+rFv+av++LGG++ Achn098161 29 RPRLRWTADLHDRFVDAVTKLGGPDM 54 59*********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 26 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.1E-22 | 134 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MERGYGGGGS GGVGQYGYES GVVMSRDPRP RLRWTADLHD RFVDAVTKLG GPDMQISIVR 60 VLMSCHYQHF NNCATMIDLL SDSQVGAETN GFKGPDALPL KEPFAGGSYT DYNAYSSGAT 120 TSSSGVNSEP GEIPIAEELR CQIEVQKRLQ EQFEVQKKLQ MRIEAQGKYL QAILEKAQKS 180 LTLDMNCSGS LEVTRAQLTN FNLALSNLVE NMDGESKDGN IIEKKILEDI HRNANRSLYL 240 GEEDEKKDIK LRIGGGFINF DLNTRGSYDF IDIRSRWMLE SKDVAREHEV PENSPTSLPV 300 RVSVPLFNMP SKIRQLTSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080374.1 | 1e-106 | myb family transcription factor PHL11 isoform X1 | ||||
TrEMBL | A0A2R6Q3M5 | 1e-131 | A0A2R6Q3M5_ACTCH; Myb family transcription factor | ||||
STRING | Solyc08g076010.2.1 | 5e-76 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 5e-44 | G2-like family protein |