PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn098041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 444aa    MW: 49568.9 Da    PI: 8.1784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn098041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-183885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
       Achn098041 38 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 85
                     678*******************************************97 PP
2Myb_DNA-binding44.14.7e-1491133145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++++E+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w+
       Achn098041  91 RGTFSQQEENLIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 133
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-273088IPR009057Homeodomain-like
PROSITE profilePS5129425.5583389IPR017930Myb domain
SuperFamilySSF466895.5E-2936132IPR009057Homeodomain-like
SMARTSM007171.4E-133787IPR001005SANT/Myb domain
PfamPF002491.5E-153885IPR001005SANT/Myb domain
CDDcd001675.55E-124185No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2489141IPR009057Homeodomain-like
PROSITE profilePS5129419.21290140IPR017930Myb domain
SMARTSM007172.5E-1290138IPR001005SANT/Myb domain
PfamPF002491.1E-1291133IPR001005SANT/Myb domain
CDDcd001671.39E-893133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MLVRIVARTH LSFASIAGQN IALHMGRHSC CYKQKLRKGL WSPEEDEKLI KHITKYGHGC  60
WSSVPKLAGL QRCGKSCRLR WINYLRPDLK RGTFSQQEEN LIVELHAVLG NRWSQIAAQL  120
PGRTDNEIKN LWNSSIKKKL KQRGIDPNTH KPFSEVENEN KVSETSKSNE SSRGGSEEGK  180
VIERGNSEKG IAIPPPSAHE FFLDRFVSTH ETSTTTTTTT KHSDIPGYFT FQHLNYRPHI  240
SFSGSGNTNF YNSNTTSSDM ISEFNSSLSP AVFPSVSTPM LTASSTHIKP SISLPSIGSF  300
DVNGAVHNWN STSTFSNNGS SSNGSSNSIE LQSNGSFFEN QIFSWGPESC IKSEKEAEIH  360
RLEGDPEDIK WSEYLQTPFL LSTALQNQTA QDIYNGTKPE TQFGTDGSSM NWHQDQHQQQ  420
PSRAADLYNK HFQRLSATFG HYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29361405108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108727.11e-179transcription factor MYB61-like
TrEMBLA0A2R6QIK70.0A0A2R6QIK7_ACTCH; Transcription factor like
STRINGVIT_14s0060g00240.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-105myb domain protein 61