PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn096691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 322aa MW: 36425.2 Da PI: 10.7612 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.5 | 2.7e-32 | 156 | 209 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Achn096691 156 PRMRWTTTLHARFVHAVELLGGQERATPKSVLELMDVKDLTLAHVKSHLQMYRT 209 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.47E-15 | 153 | 209 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 154 | 209 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 156 | 209 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-7 | 157 | 208 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MELFPAQPDL SLQINPPNTK PSSNCRREKE EEEIDLGFWK PALDSKNSLS SMPKSDASFE 60 LSLRIPAPSA PSSGHSLSPI QQQQYGLAQG LRFLRPIRGI PVYQNYPPPS FPFSQDHNPS 120 YSTTRTNTPS GLVQTQGVIR SRFLSRFPAK RSMRAPRMRW TTTLHARFVH AVELLGGQER 180 ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDRAPTSP GQSELYETGS SGVTSEDMMF 240 DVENPRKSEV SVQQGRPNLN QDNDNYHGLW SNSSSDRIRY PLRKSVREKK KRKREKKEKS 300 GKERQGRKQQ KLKGGKKHVL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-16 | 156 | 211 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 156 | 211 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 156 | 211 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 156 | 211 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-17 | 156 | 211 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 296 | KKKRKREKK |
2 | 289 | 296 | KKRKREKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028083904.1 | 1e-121 | probable transcription factor KAN2 isoform X1 | ||||
Swissprot | Q9C616 | 7e-57 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A2R6PIA2 | 0.0 | A0A2R6PIA2_ACTCH; Transcription factor KAN2 | ||||
STRING | VIT_02s0012g01940.t01 | 1e-119 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2738 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 8e-59 | G2-like family protein |
Publications ? help Back to Top | |||
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