PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn096511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 290aa    MW: 31994.5 Da    PI: 8.0004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn096511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-1391142155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h  +Er+RR+ +N+ ++ L++l+P++   + ++ + a+i+  A+eY+k+L+
  Achn096511  91 QRMTHIVVERNRRKLMNEHLAVLQSLMPES---YVQRGDQASIVGGAIEYVKELE 142
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-1489145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1689160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-1289146No hitNo description
PROSITE profilePS5088814.92690141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1091142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1096147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGLEALSTNE HFNFIIYDTF SATPTPTTAA LKPCDLGGFG GSDSGSSMAR PAGTESAGGG  60
GHGRRSAAAQ GRKKRRMRAK VCKNKEEAET QRMTHIVVER NRRKLMNEHL AVLQSLMPES  120
YVQRGDQASI VGGAIEYVKE LEHLLQSLEA QKLLVLQQGG QPPLPTTRFL TAPFAQFFAY  180
PQYTWSQFSN EYNSKSKEAM ADIEVTLIET HANLRILSRK NFRQLSKLVT GFQTLWLTIL  240
HLNVTTLDPL ALYSISAKVE EGCQLTSAEE IAGAVYHMLR IIEEEATLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177RKKRRMR
291102RMTHIVVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057886.11e-137transcription factor bHLH71
SwissprotQ9C7T42e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6PIB80.0A0A2R6PIB8_ACTCH; Transcription factor bHLH94 like
STRINGVIT_02s0012g01450.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]