PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn095861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family E2F/DP
Protein Properties Length: 761aa    MW: 84758.4 Da    PI: 7.0422
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn095861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.14.1e-25541605170
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                 r+++sL+llt+kf++l++++++g+++ln+  + L    v  ++RRiYDi+NVLe+++liek++kn+irwk
  Achn095861 541 RYDNSLGLLTKKFISLIQEAKDGALDLNKTMDVL---AV--QKRRIYDITNVLEGIGLIEKTAKNHIRWK 605
                 689*******************************...99..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF041892.5E-5423270IPR017423tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Gene3DG3DSA:1.10.10.102.6E-26538605IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-30541606IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-16541604IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.9E-23543605IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030488Biological ProcesstRNA methylation
GO:0005667Cellular Componenttranscription factor complex
GO:0031515Cellular ComponenttRNA (m1A) methyltransferase complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MSLNKNLEDD SNQNHRVTWE GCSVLLDVND GDRLVFARLT AASNLSMGNK KCSLQPLIGC  60
PFGSLFQVEN GQDGPYLSRI LPTTTEGDNV QKKVNCQIED ESKDNRALVD NNTAQNLTGE  120
DIDAMRRQGA TGDEIVQALI ANSATFEKKT SFSQVRFFEE KYRLKKQKKY APKVLLRRPF  180
TRSICETYFK KYPARIGYLR VDTLSLLLSM GNVSPHSDVL VLDMVGGILT GAVAERLGGT  240
GIVCNVYLGV TPYPIDIVRM FNFSSETCRR IVRCALTDLC SSHNGTLEQI CQPEEVCNFE  300
SQSKVRNAWF RCLLSFGFLI ISLDHFVQEE KSPLCSISMD ETVLSSENGM LDLVPEPSVS  360
PATKACKNTK AGEKASQEAI KLWKENGFSS LIIAAPDVDA WSIVKELLPF LSFSAPFVIY  420
HQYIQPLATC MRNLQLGKMA VGLQISEPWL REYQVLPSRT HPLMQMSAFG GYILSGTKIC  480
IDDQRQANET GSCKANTGGQ EAIRRHSKAE TVVASLGPKP CAGGKHYDKP KFANADPRGC  540
RYDNSLGLLT KKFISLIQEA KDGALDLNKT MDVLAVQKRR IYDITNVLEG IGLIEKTAKN  600
HIRWKLNPFE ITLQFAMQIP LMRFNPSRSI QPENVKYALY GTDCGRVTFK SEVDNLYAQE  660
CRLDERISKN GGQEDDIAVK QAKAIDSRAS SNSRHRVDNT NSSSDPQNSQ EILSDTQNFV  720
DSKASGIQKI VPSDFNIDAD YWFRSDHDES ATDLWGMQHP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ccb_B3e-392846620446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5ccx_B3e-392846620446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5cd1_B3e-392846620446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
5cd1_E3e-392846620446tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078476.10.0tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 isoform X3
TrEMBLA0A2R6PZK80.0A0A2R6PZK8_ACTCH; tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
STRINGVIT_18s0001g14120.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.23e-34E2F/DP family protein