PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn094371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YB | ||||||||
Protein Properties | Length: 215aa MW: 23556.6 Da PI: 9.3338 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.1 | 3.5e-55 | 18 | 114 | 2 | 98 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 +eqdrflPianvsrimkk lPanakisk+aketvq cvsefisf+t+eas+kcqrekrktingddl+wa++tlGfe+yv pl vyl+kyre+eg++k Achn094371 18 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQTCVSEFISFITGEASEKCQREKRKTINGDDLMWAMTTLGFENYVGPLMVYLNKYRETEGDQK 114 79********************************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.2E-52 | 15 | 124 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.07E-39 | 20 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-27 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.9E-17 | 51 | 69 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 54 | 70 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 9.9E-17 | 70 | 88 | No hit | No description |
PRINTS | PR00615 | 9.9E-17 | 89 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAGKKNLNSP IGSPSSDKEQ DRFLPIANVS RIMKKSLPAN AKISKEAKET VQTCVSEFIS 60 FITGEASEKC QREKRKTING DDLMWAMTTL GFENYVGPLM VYLNKYRETE GDQKNSIAGQ 120 EDDGSRTCIN SNNSISTSSD LKGFNDENYV LEAQVTSKSY ESHGRLVGYG ENLVGGALSI 180 GKIHELGGKN AKRPMPRKNA KRPMPTHLHP GIGW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-46 | 18 | 108 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-46 | 18 | 108 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028101959.1 | 3e-87 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 4e-59 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2R6R699 | 1e-120 | A0A2R6R699_ACTCH; Nuclear transcription factor Y subunit B-3 like | ||||
STRING | cassava4.1_026597m | 1e-84 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-61 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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