PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn094351

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 626aa MW: 70921.1 Da PI: 8.7191

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn094351	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.6e-11	74	106	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k+ rr+++NReAAr+sR+RKka++++Le+ Achn094351 74 PPDKVLRRLAQNREAARKSRLRKKAYVQQLETS 106 5799**************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-8	72	122	No hit	No description
SMART	SM00338	8.6E-7	73	133	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-8	75	109	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.65E-21	77	128	No hit	No description
SuperFamily	SSF57959	1.0E-6	77	111	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-26	163	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MDSPTAQFVT SRRMGIFEPI HQISMWEDFK VDGCQIASAS MIVEVNTKID NQSEDSSQGT 60 PRSSNKFHQG TSKPPDKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL VQLEQEVERA 120 RQQGLYVGDG IDTRHLGYSG NVNSGITTFE MEYELWVKEQ DRQICELRTA LNCHVVDRDL 180 RSLVDGSMKH YFDLFQMKAT AAKAEVFYLM HGIWKTSAER FFSWIGGFRP TELLKILVAQ 240 LDLADQQVYD VCNLRQSCQQ AEDALSQGMD KLQQILAETV AAGQVTLAME KSEALVRFVN 300 QADHLRQVTL QQMSRILTTH QAARGLLNLG EYCQRLRTLS SLWATRPCVT IISKIKTVCI 360 DIYVNDLPHK LHIYLRSGVK LSLSMAKRKV KRTVKQSASS PLSSKNCTGP KEPPILEKED 420 VFRDPEVERR SAAIRGIRDV EIDHLLTGLH LLRSYFRQEQ LQTPVLQFFE ENLPNLSVLR 480 NGKDGQYEVQ WKEKDGNLSM NLSMNQLVVS YVTIKLLTEK ASLLGADNLQ IRDFVLEEPS 540 DTHMLGLQDA LQTPGATSHR MSVGMTPKTL RLPKPGEMLL SVHGSPLGVY KEDNMESIQG 600 NQDEILAQDR NSNVSTRTYR NAPKL*

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MDSPTAQFVT SRRMGIFEPI HQISMWEDFK VDGCQIASAS MIVEVNTKID NQSEDSSQGT  60
PRSSNKFHQG TSKPPDKVLR RLAQNREAAR KSRLRKKAYV QQLETSRLKL VQLEQEVERA  120
RQQGLYVGDG IDTRHLGYSG NVNSGITTFE MEYELWVKEQ DRQICELRTA LNCHVVDRDL  180
RSLVDGSMKH YFDLFQMKAT AAKAEVFYLM HGIWKTSAER FFSWIGGFRP TELLKILVAQ  240
LDLADQQVYD VCNLRQSCQQ AEDALSQGMD KLQQILAETV AAGQVTLAME KSEALVRFVN  300
QADHLRQVTL QQMSRILTTH QAARGLLNLG EYCQRLRTLS SLWATRPCVT IISKIKTVCI  360
DIYVNDLPHK LHIYLRSGVK LSLSMAKRKV KRTVKQSASS PLSSKNCTGP KEPPILEKED  420
VFRDPEVERR SAAIRGIRDV EIDHLLTGLH LLRSYFRQEQ LQTPVLQFFE ENLPNLSVLR  480
NGKDGQYEVQ WKEKDGNLSM NLSMNQLVVS YVTIKLLTEK ASLLGADNLQ IRDFVLEEPS  540
DTHMLGLQDA LQTPGATSHR MSVGMTPKTL RLPKPGEMLL SVHGSPLGVY KEDNMESIQG  600
NQDEILAQDR NSNVSTRTYR NAPKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028077750.1	0.0	transcription factor TGA1-like isoform X2
Refseq	XP_028077751.1	0.0	transcription factor TGA1-like isoform X2
Refseq	XP_028077752.1	0.0	transcription factor TGA1-like isoform X2
Swissprot	Q39162	1e-160	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2R6S3C2	0.0	A0A2R6S3C2_ACTCH; Transcription factor like
STRING	EOX92234	1e-178	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-162	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]