PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn094071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 45355.8 Da PI: 6.7098 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22 | 4.2e-07 | 188 | 209 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Achn094071 188 FCDICGKGFKRDANLRMHMRAH 209 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 302 | 318 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ Achn094071 302 SCGTTFSRKDKLFGHMA 318 5**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.04E-6 | 184 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-6 | 187 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.905 | 187 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 187 | 209 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0054 | 188 | 207 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 189 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 37 | 233 | 266 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 13 | 271 | 293 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 200 | 299 | 323 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MIWVIYLLLL RDVTRFHKYT LAMGSGKFRI EKVLAPADSA PRPPEASSSD IRHPPAAGDP 60 RVPLLNLSTV RSRMDSLHRF LSDSVNNDTL LGKHPMDMVS NEISAAIHQI FVNGAALLAC 120 AQTAPNSSSV ATDLKFPDNL GASTGMSKER EVEELKIEDE EMKDEVPTED WEIIELDSVE 180 LLAEHIHFCD ICGKGFKRDA NLRMHMRAHG NQFKTLEALA KPERSLPERK TRFSCPFMGC 240 NRNKLHKKFR SLKSAICVKN HFKRSHCPKM YSCNRCNKKS FSVVADLKSH LKHCGESKWK 300 CSCGTTFSRK DKLFGHMALF EGHMPAVAVG EEEEKAKAVN APVIVEDDDE DKDRMEAETG 360 VNSSDNGFLE GLFDGFGVIE GYCLQDLLDL GSPNGLGATM NEFFNF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028120431.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 9e-80 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2R6S337 | 0.0 | A0A2R6S337_ACTCH; Protein SENSITIVE TO PROTON RHIZOTOXICITY like | ||||
STRING | cassava4.1_009526m | 1e-150 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10000 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 3e-79 | C2H2 family protein |