PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn093421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 311aa MW: 34064.1 Da PI: 6.5903

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn093421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.1	2.2e-29	147	200	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wt++LH+rFv++v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl Achn093421 147 RPRLVWTSQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 200 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.209	144	203	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-19	144	204	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-29	146	205	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-24	148	200	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-7	150	199	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGEEVRMSEC DGVDDDGCAG DDDRVSEWEV GLPNADDLTP LSQPLIPPEL ASAFSILPEP 60 RRRMIDVNRA SQNTLSSIRG ESQALSSSSK FKFKSFSEDR AKDGVVVEGD EADRRKVRRI 120 DGSSEEADSA LRAENGGDDP SARTLKRPRL VWTSQLHKRF VDVVAHLGIK SAVPKTIMQL 180 MNVEGLTREN VASHLQKYRL YLKRMQGLSS EGPSSSDHLF ASTPVRQSLH ESGGSGNGHV 240 AMPIPMPYRP QMMHMPVMGM AHGHGHMGMP VGNPGSYQGF ESYNMVQQRD WSGNKFGSSA 300 SYPHVTPNDK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-33	147	203	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028121610.1	1e-164	transcription factor PCL1
Refseq	XP_028121611.1	1e-164	transcription factor PCL1
Swissprot	Q9SNB4	3e-86	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A2R6P655	0.0	A0A2R6P655_ACTCH; Transcription factor LUX like
STRING	VIT_06s0004g05120.t01	1e-144	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3580	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	4e-77	G2-like family protein

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]