PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn093351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 137aa MW: 16087.8 Da PI: 4.4145 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.7 | 3.2e-12 | 70 | 116 | 2 | 48 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkt 48 fYn+Y+k++GF vrk +ksk++g +++ +f C keg+ree+ kk+ Achn093351 70 FYNRYSKTMGFGVRKGGVRKSKKDGCVIDCRFFCFKEGFREERYKKN 116 9*****************************************99983 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-9 | 70 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MVYGLEYFDT EIYDEEEHID ELHGHEEHAG DDTEDRLEDL NMENKEIDVN NVEKPYVGMK 60 FESNDDAYVF YNRYSKTMGF GVRKGGVRKS KKDGCVIDCR FFCFKEGFRE ERYKKNAAIK 120 KGITEGLEFD VEQEYM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660647.1 | 3e-17 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_010660648.1 | 3e-17 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1R3FXA4 | 1e-18 | A0A1R3FXA4_9ROSI; Uncharacterized protein | ||||
STRING | VIT_14s0068g00770.t01 | 2e-16 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-08 | FAR1-related sequence 5 |