PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn092541

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 493aa MW: 56170.3 Da PI: 6.7925

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn092541	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.3	4.8e-29	83	168	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Achn092541 83 RWPRQETLTLLEIRSRLDCKFKEANQKGPLWDEVSRIMcDEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 168 8*********************************998***************************98..55667*****85 PP
2	trihelix	59.5	8.6e-19	359	434	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W ++e+ +Lie+r++me+r+++++ +++ lWee+++km g+ers +Ck+kwe +n++ ++ k+ e++ + s+c Achn092541 359 WLESEITKLIELRTSMETRFEQSRgSEEVLWEEIGAKMGCLGYERSGLMCKDKWERINNYLRNKKRKENSV---RGSNC 434 *******************864399**********************************99999985...23344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.4	80	143	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.98	82	141	IPR017877	Myb-like domain
CDD	cd12203	8.30E-19	83	148	No hit	No description
Pfam	PF13837	6.1E-20	83	169	No hit	No description
SMART	SM00717	0.014	355	418	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-11	358	437	No hit	No description
PROSITE profile	PS50090	6.4	358	416	IPR017877	Myb-like domain
CDD	cd12203	2.25E-19	359	423	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MNGRPNFPAI GPPGDLFSGH RNLNPYEMVM AGAGADVAPR GLVHYEFRSD GASVGAAASS 60 GSLNNGLEAE GGGGGGGDGG TGRWPRQETL TLLEIRSRLD CKFKEANQKG PLWDEVSRIM 120 CDEHGYQRSG KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GDSNQHQASA 180 SETPLIGNNF QFHNSSNSYA QRSNPECFQG PKLSDNSLSL SHSSEFDTSS SDDHDDTVKK 240 KGRGRRSWKS KIRDFIDLQM TKLMEKQEEW LEKMIKTLEK KEQEREIREE EWRKREAERV 300 EREHKFWASE RAWIEARDAA LFEALHKLTE KDQGMKDSEP QRIENGSEII SNAWRGESWL 360 ESEITKLIEL RTSMETRFEQ SRGSEEVLWE EIGAKMGCLG YERSGLMCKD KWERINNYLR 420 NKKRKENSVR GSNCYFENNE SAVGYNHGGG AAYCEIMNEQ RPSESCFRFL GGGDGDNMWE 480 SYGLKLSKGE NH*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MNGRPNFPAI GPPGDLFSGH RNLNPYEMVM AGAGADVAPR GLVHYEFRSD GASVGAAASS  60
GSLNNGLEAE GGGGGGGDGG TGRWPRQETL TLLEIRSRLD CKFKEANQKG PLWDEVSRIM  120
CDEHGYQRSG KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GDSNQHQASA  180
SETPLIGNNF QFHNSSNSYA QRSNPECFQG PKLSDNSLSL SHSSEFDTSS SDDHDDTVKK  240
KGRGRRSWKS KIRDFIDLQM TKLMEKQEEW LEKMIKTLEK KEQEREIREE EWRKREAERV  300
EREHKFWASE RAWIEARDAA LFEALHKLTE KDQGMKDSEP QRIENGSEII SNAWRGESWL  360
ESEITKLIEL RTSMETRFEQ SRGSEEVLWE EIGAKMGCLG YERSGLMCKD KWERINNYLR  420
NKKRKENSVR GSNCYFENNE SAVGYNHGGG AAYCEIMNEQ RPSESCFRFL GGGDGDNMWE  480
SYGLKLSKGE NH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022743398.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-121	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2R6Q3E7	0.0	A0A2R6Q3E7_ACTCH; Trihelix transcription factor PTL like
STRING	VIT_08s0007g03820.t01	1e-178	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-94	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]