PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn091111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family G2-like
Protein Properties Length: 761aa    MW: 83491.9 Da    PI: 4.9681
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn091111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27211261151
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 ++r+ W+peLH+rFv+a+eqLGG++ AtPk+i+elm+v+gLt+++vkSHLQ
  Achn091111 211 RQRRSWSPELHRRFVDALEQLGGAQTATPKHIRELMEVDGLTNDEVKSHLQ 261
                 58************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2208268IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-24208261IPR009057Homeodomain-like
SuperFamilySSF466894.12E-13209265IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-22212265IPR006447Myb domain, plants
PfamPF002497.0E-6213262IPR001005SANT/Myb domain
CDDcd060602.81E-122256742No hitNo description
PfamPF148814.7E-26342523IPR029209DML1/Misato, tubulin domain
SuperFamilySSF524901.13E-23345524IPR003008Tubulin/FtsZ, GTPase domain
Gene3DG3DSA:3.40.50.14402.3E-10354525IPR003008Tubulin/FtsZ, GTPase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGANSSELNL DLGSIYAPKT ISEILADVSE TGDGSEKSSK LNGFVRVLED ELTKIHAFKP  60
ITKLKEGGMQ SERMEIRPVT EEFVALKGDY VKGEGAKVSI DLGDKKDWMS SARLWSTSKV  120
KCENNYADLK NQFSRDVQDG SATEKPWQLC NLGNRGGAFL PFKGQSGLRM EPVAEMGLNL  180
EGKSGSSGSG SSSVTDQMKP PNKANQQEKK RQRRSWSPEL HRRFVDALEQ LGGAQTATPK  240
HIRELMEVDG LTNDEVKSHL QDEFLGLADD PQDDVVFKNQ CLNMDVLYRT GETQQPQKKN  300
LYLQSLYEEE QEKLHMVNGI KSGKHDFCSD IQEKDIVQSL ENEVQCWTDF SKVHYHPRSL  360
YELNGLWVDV EQFNNYGIGR DAFSEGMRGE EMEGRLRFFI EECDHIQGIQ FIVDDSGGFS  420
GLAAEFLENI ADEYTIIPVL LYSVRGPGSY MNPSIRNQTV SQNLHDAVSF SRLSSFCKLV  480
VPIGLPSLGE SKASRFLLIN NENPYHTSAV YASALHSISL PFRMEPLGPA DESCYVSGGI  540
GMNGAIQMLA GQARQNIVNI LDVAMPAPSL TGKEEEQSLL GNLQPLTPET LDDLEDLQAV  600
ESLTIHGAHA AGGKRASVSE VNNAVQAAYN HAMTRPRFSH LSVGTCPLPI PLPFPSIFGN  660
LVGQCGELLG SPISSYPSRG SLDVHSIPMA ARLRSSSAVL PFLEKRLANL RKLGIQHGAV  720
GTEVARSWGF GKDELVDIGE NLSKMVTTLD PHSDVSSDSD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078159.10.0protein misato homolog 1 isoform X4
RefseqXP_028078160.10.0protein misato homolog 1 isoform X4
TrEMBLA0A2R6RL630.0A0A2R6RL63_ACTCH; Protein misato like
STRINGVIT_07s0197g00050.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.19e-42G2-like family protein