PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn090241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26599.8 Da PI: 6.7812 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 191 | 228 | 11 | 54 |
HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + R+++++ L+ ++P + +++ +++L +Av+Y+ksL Achn090241 191 K-RQKMRKMVKVLQGIVPDgN------RMNTVAVLDEAVKYLKSL 228 4.6899999999999999955......9***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.81 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-6 | 186 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-7 | 188 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-6 | 188 | 233 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-8 | 188 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQSDQQLFPQ NPTFPISPIS NQVGGSYMHS APNASAFGGT ILPTGLKHSG AIHGIAFQPS 60 ELCPKNFIIF DQSQNRSQIM FHPVIAPQFC YPGFNIPSSY IHDNVERETN TEKEAPSSLR 120 ENLTDIDALL SLEEEEQEEC EEEEVSTARK HRNYGSDSSD SCSSYGSKPK KSRLSSSQKS 180 SGSGNSCSER KRQKMRKMVK VLQGIVPDGN RMNTVAVLDE AVKYLKSLKI EAQKLGVTNL 240 P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 195 | RKRQKMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028100467.1 | 1e-107 | transcription factor bHLH144 | ||||
TrEMBL | A0A2R6PY46 | 1e-136 | A0A2R6PY46_ACTCH; Transcription factor bHLH144 like | ||||
STRING | XP_002519719.1 | 2e-84 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8124 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 9e-28 | bHLH family protein |