PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn089571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 251aa    MW: 28353 Da    PI: 5.1934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn089571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++   ++R++k+c++rw +yl
       Achn089571 14 KGPWTAEEDKKLINFILNNGQCCWRAVPKLADLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding58.61.4e-1869111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        T+eE++l +d++++lG++ W++Ia++++ gRt++++k++w++y
       Achn089571  69 LLTEEEEQLVIDLHARLGNR-WSKIASRLP-GRTDNEIKNHWNTY 111
                      569*****************.*********.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.495961IPR017930Myb domain
SuperFamilySSF466893.59E-2711108IPR009057Homeodomain-like
SMARTSM007173.8E-111363IPR001005SANT/Myb domain
PfamPF002498.9E-141461IPR001005SANT/Myb domain
CDDcd001675.35E-81661No hitNo description
PROSITE profilePS5129428.81562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2563116IPR009057Homeodomain-like
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002497.0E-1768111IPR001005SANT/Myb domain
CDDcd001673.72E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL NNGQCCWRAV PKLADLRRCG KSCRLRWTNY  60
LRPDLKRGLL TEEEEQLVID LHARLGNRWS KIASRLPGRT DNEIKNHWNT YIKKKLLKMG  120
IDPVTHEPLN KEAKATETTS YADHVQLQEA NNKNIPSSEN SSSSPMDHNF SSDESNFLSI  180
SNDDPLMSCL CGVEIPQLVD PSWEFPGLWD ENFAGLLNCQ DFGIQDFGID CFDDAEAVNS  240
LNTLEMGHNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264150.21e-123PREDICTED: protein ODORANT1
SwissprotQ50EX61e-100ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2R6PI501e-175A0A2R6PI50_ACTCH; Uncharacterized protein
STRINGVIT_00s1241g00010.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-90myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]