PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn088191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1101aa MW: 118923 Da PI: 8.0105 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.6 | 4.8e-07 | 375 | 392 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+++CH+GpC++C Achn088191 375 CGNHVCNEICHPGPCGEC 392 ****************** PP | |||||||
2 | zf-NF-X1 | 18.6 | 4e-06 | 529 | 547 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC Achn088191 529 CGQHSCESLCHSGHCPPCL 547 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 9.89E-6 | 135 | 203 | No hit | No description |
PROSITE profile | PS50016 | 8.769 | 141 | 202 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 144 | 199 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.317 | 144 | 200 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 1.86E-4 | 233 | 294 | No hit | No description |
SMART | SM00438 | 0.05 | 256 | 274 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.6 | 258 | 273 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.15E-10 | 301 | 349 | No hit | No description |
SMART | SM00438 | 0.0087 | 311 | 330 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.044 | 313 | 328 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.48E-9 | 365 | 408 | No hit | No description |
SMART | SM00438 | 5.1E-5 | 375 | 394 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.9E-4 | 375 | 392 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.41E-13 | 423 | 471 | No hit | No description |
SMART | SM00438 | 0.0029 | 433 | 452 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.018 | 433 | 451 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 64 | 491 | 521 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.1 | 491 | 502 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.93E-8 | 519 | 559 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 529 | 548 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.8E-5 | 529 | 546 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.53E-6 | 576 | 624 | No hit | No description |
SMART | SM00438 | 0.058 | 586 | 604 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.1 | 586 | 603 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.22 | 639 | 659 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.059 | 639 | 657 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 12 | 671 | 697 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.1 | 678 | 699 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 8.1E-5 | 787 | 852 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 3.6E-4 | 900 | 943 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1101 aa Download sequence Send to blast |
MSSQFRNDRT DNNNRSRFAQ SGRREWVPRG SADNTSASST GTVANPPSSF NLNPKGYVTR 60 GSTSNTSASS TGTVANAPSS FNLNPNGYGG ERGNTGARRH IGRPSNQQRE RGRGNQEEKG 120 SKDLGLPQLV QEIQEKITKG TVECMICYDM VRRSAPIWSC SSCYAIFHLN CIKKWARAPT 180 SVDSLAEKNQ GFNWRCPGCQ SVQLTALKEI RYLCFCGKRQ EPPPDLYLTP HSCGEPCGKP 240 LEKEVPDGTM SKEDLCPHAC VLQCHPGPCP PCKAFAPPRL CPCRKKIITT RCSDRKSVLT 300 CGQRCEKLLE CWRHRCERVC HLGHCDPCQV MINASCFCKK KTEVVLCGEM AVKGEVKAED 360 GVFSCNSVCR KTLGCGNHVC NEICHPGPCG ECDLLPGRIK TCHCGKTSLQ EERQSCLDPI 420 PTCSQICGKS LPCGVHHCRE NCHAGNCAPC TVLVTQRCRC GSTSRTVECY KTTMDEDKFT 480 CDKPCGQKKN CGRHRCSEKC CPLSSSSNSL SGDWDPHLCS IPCGKKLRCG QHSCESLCHS 540 GHCPPCLETI FTDLTCACGG TSIPPPQPCG TPPPSCQYPC SVPQPCGHSS THSCHFGDCP 600 PCPVPIAKEC TGGHVVLRNI PCGSRDIRCN KLCGKTRQCG MHACARTCHP PPCDSSCGTS 660 SGLKASCGQT CGAPRRDCRH TCTALCHPSS PCPDGRCISG GLKGDTVFEA SVIQKLPVPL 720 QPVDANGKKI PIGQRKLTCD DECAKTERKR VLADAFGINT PNLDAIHFSE NSVMSEALSE 780 LLRRDPKWVL SVEERCKFLV LGRGRGGSSA LRVHVFCPML KEKRDAVRLI AERWKLTVNA 840 AGWEPKRFVV VHVTPKSKAP SRVLGAKGSA AVNMLQPPTF DPLTDMDPRL VVALFDLPRE 900 ADVSALVLRF GGECELVWLN DKNALAVFSD PARAATAMRR LDQGSVYYGA VVVPQNGSAS 960 VAASGANSLG GAGLAKDGAA SVSMKGNPWM KAVMQEQNWR DSSWGSEEWL AESANTEPSV 1020 WKGNDVPFAT SANRWSVLDS ATTQISSDAS AGIEDRAKSS GTQMVSDFEA EASGSNLGGQ 1080 KESNTEEASD VVDDWEQAYD * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028097082.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Refseq | XP_028097083.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2R6S128 | 0.0 | A0A2R6S128_ACTCH; NF-X1-type zinc finger protein | ||||
STRING | VIT_17s0000g01920.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |