PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn087381
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 349aa    MW: 37653 Da    PI: 6.6329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn087381genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20165214255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Achn087381 165 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 214
                 59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-33164224No hitNo description
SMARTSM003803.6E-38165228IPR001471AP2/ERF domain
PROSITE profilePS5103223.261165222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-32165223IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-23165223IPR016177DNA-binding domain
PfamPF008473.4E-14166214IPR001471AP2/ERF domain
PRINTSPR003673.3E-11166177IPR001471AP2/ERF domain
PRINTSPR003673.3E-11188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAAMDLWSS TPFQSDSDLF RGDELMGALE PFIKSASPTS PSSSLSLPST IPSLSSPSLS  60
TSYSNSPSPP VSVSVSAQPV SYPDGCSNST TQFFSQGFST HDPLGLEQPG LVGLKHLTQN  120
QIQQIQAQIQ FQQPSWTQQH QSLSFLSPKP VPMKQAGYPP KPTKLYRGVR QRHWGKWVAE  180
IRLPKNRTRL WLGTFDTAEE AALAYDKAAY KLRGDYARLN FPNLRHSGSH IGGDFGEYKP  240
LHSAVDAKLN AICQSLAQGK SLDVKKRSPA SKKPPAAAAP PPPPPTESEV DNSASNSGSP  300
MVSESDGSGG SSPMSDLVFP DFTEEDPAWD ASLILQKYPS YEIDWASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21164228469ATERF1
3gcc_A4e-21164228469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085012.11e-120ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-97RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2R6RNQ50.0A0A2R6RNQ5_ACTCH; Ethylene-responsive transcription factor RAP2-4 like
STRINGPOPTR_0005s16690.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-65related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]