PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn085531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 690aa MW: 76758.2 Da PI: 6.8408 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 465.4 | 3.3e-142 | 296 | 686 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+a+yf eALa+r++++++++ykal++++ s +see+ ++klf+e +P+lk++++++N Achn085531 296 LIHLLLACANHVATGSLENANITLDQISQLASPDGDTMQRIASYFNEALAERILKNWPGIYKALHSTRIS--LVSEEILVRKLFYESFPFLKVAFVITN 392 689*************************************************************999887..7************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaI ea+ege++vHiiD+++ +++QW aLlq L++Rpegpp+lRiTgv++ +ke le++++ L++ Ae+l++pf+fn ++++led+++e+Lrvk+ Achn085531 393 QAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQ----KKEVLEQMAHILTEEAEKLDIPFQFNQ-IVSKLEDIDIEKLRVKT 486 **************************************************....9**************************.7999************* PP GRAS 199 gEalaVnlvlqlhrll.......................desvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 gEala+++vlqlh+ll ++s+++++ + ++L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le+ Achn085531 487 GEALAISSVLQLHTLLanddellrkkslvtpknanglnlQRSLQMNQgTLGDFLNALWGLSPKVMVVMEQDSNHNGSTLMERLSESLYFYAALFDCLES 585 ***************************************8888888878899*********************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +lpr+s er kvE++l+g+ei+n+++ceg+er+ rhe+lekW +rl+ aGF++vpls++ + qa++ll+ ++ dgyr++ee+g+++ +W+dr+L+svSa Achn085531 586 TLPRTSLERLKVEKMLFGEEIKNIISCEGSERKRRHEKLEKWIQRLDLAGFGSVPLSYYSVLQARRLLQSYSCDGYRIKEENGCVMVYWQDRALFSVSA 684 *************************************************************************************************** PP GRAS 373 Wr 374 Wr Achn085531 685 WR 686 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF110581 | 1.31E-51 | 19 | 236 | No hit | No description |
Pfam | PF04227 | 7.5E-57 | 67 | 234 | IPR007342 | Pseudouridine-5'-phosphate glycosidase |
PROSITE profile | PS50985 | 59.562 | 270 | 666 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-139 | 296 | 686 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016798 | Molecular Function | hydrolase activity, acting on glycosyl bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MGTTVGYGVW ISSSTTSCLS AEELERLANL GTKSRKTARR DIAHVVSKTQ TISLFMKVID 60 YHIVFMTMDI SSDLTELGRT PIAVISAGVK SILDIPRTLE YLETQGVCVA AYKTDEFPAF 120 FTETSGYKPQ KEKGEEETKA NANMKLKLGT GILIAVPIPK EYSASGSLIE SAIQRALKEA 180 RDKGVTGNAE TPFLLARVNE LTGGASLSSS ILSLDAQNIA LVKNNALVGA KIAVSLAQMR 240 EGDHRVSYSQ MFQDDGSSSV TSSPLKAFPM MSVSPGFGSP YPWLRELKSE ERGLYLIHLL 300 LACANHVATG SLENANITLD QISQLASPDG DTMQRIASYF NEALAERILK NWPGIYKALH 360 STRISLVSEE ILVRKLFYES FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NAAEPAQWRA 420 LLQDLSARPE GPPHLRITGV HQKKEVLEQM AHILTEEAEK LDIPFQFNQI VSKLEDIDIE 480 KLRVKTGEAL AISSVLQLHT LLANDDELLR KKSLVTPKNA NGLNLQRSLQ MNQGTLGDFL 540 NALWGLSPKV MVVMEQDSNH NGSTLMERLS ESLYFYAALF DCLESTLPRT SLERLKVEKM 600 LFGEEIKNII SCEGSERKRR HEKLEKWIQR LDLAGFGSVP LSYYSVLQAR RLLQSYSCDG 660 YRIKEENGCV MVYWQDRALF SVSAWRCRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-67 | 280 | 688 | 2 | 380 | Protein SCARECROW |
5b3h_D | 1e-67 | 280 | 688 | 2 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028094205.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_028094206.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_028106666.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_028106667.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2R6P829 | 0.0 | A0A2R6P829_ACTCH; Scarecrow-like protein | ||||
STRING | EOY32806 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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