PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn085431

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 395aa MW: 44028.8 Da PI: 7.4249

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn085431	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.5	1.1e-08	3	29	31	57
HHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakekk 57 e+A +lgLte+qV+ WF+ rR k+k+ Achn085431 3 SEIAGSLGLTEKQVSGWFCHRRLKDKN 29 79**********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.948	1	30	IPR001356	Homeobox domain
CDD	cd00086	4.80E-6	1	31	No hit	No description
SuperFamily	SSF46689	1.67E-6	2	37	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-7	2	29	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-6	3	28	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MKSEIAGSLG LTEKQVSGWF CHRRLKDKNS QHGEAPANGR QDRSSGIVQD HVSGHRQDSC 60 SSTKQGDNRH VNPKEVESRR FTGQDYSAAD LAYEHGHDPD GNDSDTSSES SLPLQYRVHH 120 QNGDPFDMAI SRYLPQGENM LPINSMSIRP RIGPSGYLKV KAPVENAAIT AVKRQLGRHY 180 REDGPALGVE FDPLPPGAFE SSNKDPVNEP CYIGDPDLRP SPDFSRICSQ PNTSMNYQVY 240 NSKMSSQDAD LEGNSFTIMR RFDHWENSLG HQSKPKPILP NHTNPFPGLN SSIEMNEASA 300 GEISVYGSCK MRAKPDLEGR IRVSVSGHHL RPCGYQVTGG QRDEPWLCNT YDVTTRNAHR 360 ECFASKYSNL TRKTRESLDM EDRALSRRMA KVLI*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MKSEIAGSLG LTEKQVSGWF CHRRLKDKNS QHGEAPANGR QDRSSGIVQD HVSGHRQDSC  60
SSTKQGDNRH VNPKEVESRR FTGQDYSAAD LAYEHGHDPD GNDSDTSSES SLPLQYRVHH  120
QNGDPFDMAI SRYLPQGENM LPINSMSIRP RIGPSGYLKV KAPVENAAIT AVKRQLGRHY  180
REDGPALGVE FDPLPPGAFE SSNKDPVNEP CYIGDPDLRP SPDFSRICSQ PNTSMNYQVY  240
NSKMSSQDAD LEGNSFTIMR RFDHWENSLG HQSKPKPILP NHTNPFPGLN SSIEMNEASA  300
GEISVYGSCK MRAKPDLEGR IRVSVSGHHL RPCGYQVTGG QRDEPWLCNT YDVTTRNAHR  360
ECFASKYSNL TRKTRESLDM EDRALSRRMA KVLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028089174.1	0.0	homeobox-DDT domain protein RLT1-like isoform X2
TrEMBL	A0A2R6P842	0.0	A0A2R6P842_ACTCH; Homeobox-DDT domain protein
STRING	VIT_06s0009g03530.t01	1e-117	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-50	HB-other family protein