PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn082591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 332aa    MW: 36370.5 Da    PI: 5.2997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn082591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-175098355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Achn082591 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 98
                56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-3349112IPR001471AP2/ERF domain
CDDcd000184.32E-2949105No hitNo description
PROSITE profilePS5103220.49549106IPR001471AP2/ERF domain
PRINTSPR003672.2E-75061IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-2850106IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2050107IPR016177DNA-binding domain
PfamPF008478.8E-115298IPR001471AP2/ERF domain
PRINTSPR003672.2E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSTSQTPQKP SQPYDPAPVH TGFSILQRNT SPPQPGERRG RRKQAEPGRF LGVRRRPWGR  60
YAAEIRDPTT KERHWLGTFD TAHEAALAYD RAALSMKGTQ ARTNFVYSHQ HNNNSNNNTL  120
TPFDLQTLIQ PSQYSHEQFF ITTNQKRPCQ PETTCQGGTH IVNHSDNDSG SQSSYGSSPN  180
DSNNFFSSGQ NNSGYLGCIV PDSCLNPPNT TKSSKDGNLS SYTSSQTHFD DMGMGEMGSA  240
PNPNDDLPCF DGLSYGFWGC DQTWELNSCE FSAATTDNNN PLGVENGCME MENLYPNSGN  300
PMPTASSSSS ATCPYFVPPF GDGVEFGYSL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2040115579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276452.11e-106PREDICTED: ethylene-responsive transcription factor ERF086
TrEMBLA0A2R6PJZ00.0A0A2R6PJZ0_ACTCH; Ethylene-responsive transcription factor
STRINGEOY064471e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-49ERF family protein