PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn081921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 712aa    MW: 77434.7 Da    PI: 7.8247
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn081921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-095535852254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 ++yp+ +++  LA+++gL+ +qV++WF N R +
  Achn081921 553 HPYPTDTDKHMLATRTGLSRNQVSNWFINARVR 585
                 89*****************************88 PP
2BELL932.7e-304184721872
        BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  V+krYkqy++q+q+v+ssFe vagl sa+pY+slAlk+iSrhFrcLk+ai++qi
  Achn081921 418 LVCKRYKQYHQQMQMVVSSFESVAGLSSATPYVSLALKTISRHFRCLKNAISDQI 472
                 69****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-33271470IPR006563POX domain
PfamPF075264.8E-40276469IPR006563POX domain
PROSITE profilePS5007111.726526589IPR001356Homeobox domain
SMARTSM003895.7E-8529593IPR001356Homeobox domain
CDDcd000862.91E-11529590No hitNo description
SuperFamilySSF466892.1E-16531595IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26532593IPR009057Homeodomain-like
PfamPF059205.4E-18546585IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MLNFAANSQV LVPSKDSNRP VVEGGASFGN SSHPMSSMFN SIAKVSGDPQ NCGGTWKSIG  60
SQQSCDWIVN YSGCQSNPTP MFIGESLASD VKVNANLSSH SLYLKPSFNG YQDMQSSLTN  120
PSSEVSNQNN QKHYDEMHFN SHPFYPNPSL LPNYGDQSNP WISGELGYLA NKSSSDLRAV  180
ANDSNTQGLS LSLSPVLPSK PQTNQCGEDL HSAIGVLNDP HGSKGLKKDY LCSNLKPTVG  240
GSRVLGSSTS QEMVGSSTFA HRNMGPLGPF TGYATILKGS KFLKPAQVLL DEICSATDPQ  300
PIRSCEVYDK GGSEEISGSA NAVNVSESVV GAKGGDSGVS SSTFYGSNKM SGEACVRSSS  360
GEYFRPEYQQ KKAKLLFMQE ELNGIFTGYK YKSCLEECKE CKSFDLKLYG NTISIKFLVC  420
KRYKQYHQQM QMVVSSFESV AGLSSATPYV SLALKTISRH FRCLKNAISD QIKHIRKTLG  480
EDLSPTTGAS SSMGDTRSSG GIKFVDQSFM KPKSGGGNMG FFEPQQPVWR PQRGLPERSV  540
AVLRSWLFDH FLHPYPTDTD KHMLATRTGL SRNQVSNWFI NARVRLWKPM VEEIHMLETK  600
GLAEPNSNAG KTDGQPTSAG EGPSCPNDDH PSAEQWNQEK RSRVECQVPA AMDGGSLMGF  660
VPYHRSALEI GGLGPVSLTL GLRQSAESVQ QQQEHQIRQH FGGQMIHDFV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A7e-15535593159Homeobox protein Meis2
5bng_B7e-15535593159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282519.20.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_010651201.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_010651202.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_010651204.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A2R6PQ680.0A0A2R6PQ68_ACTCH; BEL1-like homeodomain protein 8
STRINGVIT_06s0004g02580.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-82BEL1-like homeodomain 8