PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn081181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 291aa    MW: 32661.8 Da    PI: 6.1711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn081181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++ +G gtW++ ++  g+ R++k+c++rw +yl
       Achn081181 14 KGAWTPEEDQILVDYITTHGHGTWRSLPKLAGLPRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.64.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+  +++++ + G++ W+ Ia++++ gRt++++k++w+++l
       Achn081181  67 RGPFTPEEENTIIQLHGMIGNK-WAVIASKLP-GRTDNEVKNFWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.877961IPR017930Myb domain
SuperFamilySSF466894.59E-3013108IPR009057Homeodomain-like
SMARTSM007173.8E-131363IPR001005SANT/Myb domain
PfamPF002494.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-241568IPR009057Homeodomain-like
CDDcd001672.40E-101661No hitNo description
PROSITE profilePS5129423.89762116IPR017930Myb domain
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.8E-1567112IPR001005SANT/Myb domain
CDDcd001677.83E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRLPCCEKE LVKKGAWTPE EDQILVDYIT THGHGTWRSL PKLAGLPRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEENTIIQ LHGMIGNKWA VIASKLPGRT DNEVKNFWNS HLKKRFFFLG  120
HNLQASGPTS IDMKSKSPLT SHMTQWESAR VEAEARLSMD SFINPSPLSK PDCDYFLRLW  180
NSEVGESFRK ISELSGKESR SPTSQTTSSI KAIEYNKYTP TEQKCIEYKC TSNGDADELM  240
MAGSDSSNAY DQLADSSDSA LNMLLDFPSG DDMGFLQGQT SDDISIFLEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141167108B-MYB
1h8a_C2e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065535.11e-135transcription factor MYB41-like
SwissprotQ9M2D95e-98MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2R6RSS80.0A0A2R6RSS8_ACTCH; Myb-related protein like
STRINGcassava4.1_026502m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-100myb domain protein 17