PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn081171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 30540.9 Da PI: 6.2567 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l +++ ++G g+W++++ g+ R +k+c++rw++yl Achn081171 16 KGLWSPDEDQRLRNYILRHGHGCWSSVPVNAGLQRNGKSCRLRWLNYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 70 | 114 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g T +E+e + ++ +lG++ W+ Ia++++ gRt++++k++w+++l Achn081171 70 GMLTSQEEETVLTLHVMLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL 114 56699****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 10 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.934 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.51E-9 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.381 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-9 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MRCTKPVEKP KPNHKKGLWS PDEDQRLRNY ILRHGHGCWS SVPVNAGLQR NGKSCRLRWL 60 NYLRPGLKRG MLTSQEEETV LTLHVMLGNK WSQIAQHLPG RTDNEIKNYW HSHLKKHVAK 120 TEQTENTQSS LSSSNPSSEE SFEHVEASSI NTHPESGHNH LPKLLFSEWL SLDHFQGQDT 180 GNLDYSVNPG FIPVNQTLPK DPDFQDSFLE SLLNESSVSN GSVSDHELFH IPELKTEDWL 240 QDDGFGNFVT DDDMCIHFHA TSDVMYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 12 | 118 | 3 | 108 | B-MYB |
1h8a_C | 2e-21 | 12 | 118 | 23 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061091.1 | 3e-98 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 6e-60 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A2R6RSU2 | 0.0 | A0A2R6RSU2_ACTCH; Transcription factor like | ||||
STRING | XP_008234256.1 | 5e-88 | (Prunus mume) | ||||
STRING | EMJ22345 | 6e-88 | (Prunus persica) | ||||
STRING | PGSC0003DMT400037080 | 3e-88 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 7e-59 | myb domain protein 18 |
Publications ? help Back to Top | |||
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