PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn079421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 410aa    MW: 46072.6 Da    PI: 7.1408
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn079421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.42.2e-123384091374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkf 93 
                 +++lL++cAe +s +d+++a++l a ls + +sp+gd+++Rl++ ft+AL+ rla++v+ ++ +  p +t++ +     +    +++ ++++v+P+++f
  Achn079421  38 MRQLLISCAELISRSDFAAAHRLSAILSANsSSPYGDSTERLVHQFTKALSLRLANTVPATATSNIPFPTPNVTllesdENFLHSSYLTLNQVTPFIRF 136
                 589**************************9899***********************999999888777777666676433444455566********** PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 +hltaNqaIleaveg  +vHi+Df++++G+QWp+L+qa+a+R  +pp+lRiTg g+    +++ l++tg+ L+kfA +lg++f+f++l+ +  +d    
  Achn079421 137 GHLTANQAILEAVEGRPAVHILDFNVMHGVQWPPLMQAMAER-YPPPTLRITGTGH----DADLLRRTGNHLSKFALSLGLRFHFHPLLLSPDDDDPAA 230
                 *****************************************9.999**********....9***************************99999999999 PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +  + p+E+laVnl l lh+ll+++ +    ++ +L  +k ++P+vv+vve+ea+hn++ Fl+rf+ea+++y+a+fdslea+lp++s+er++vEr ++g
  Achn079421 231 AVPLLPDETLAVNLELYLHKLLKDRDK----TRLFLLKIKAMNPRVVTVVEREANHNHPIFLQRFIEAVDHYTAVFDSLEATLPPASRERMVVERLWFG 325
                 **********************55555....556***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 rei ++va+eg++rrerhe++++W+++l+++GF +vpls +a +qaklllr ++ s+gy+++  ++s++lgW+++ L+svS+Wr
  Achn079421 326 REIADIVAAEGDNRRERHERFRSWEMMLRSSGFCNVPLSPFALSQAKLLLRLHYpSEGYQLHILNASFFLGWQNHILFSVSSWR 409
                 ***********************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.01812388IPR005202Transcription factor GRAS
PfamPF035147.6E-12138409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLGSFGSSRE EAEDPSASHH HQIQQLPPGG FPSSATHMRQ LLISCAELIS RSDFAAAHRL  60
SAILSANSSS PYGDSTERLV HQFTKALSLR LANTVPATAT SNIPFPTPNV TLLESDENFL  120
HSSYLTLNQV TPFIRFGHLT ANQAILEAVE GRPAVHILDF NVMHGVQWPP LMQAMAERYP  180
PPTLRITGTG HDADLLRRTG NHLSKFALSL GLRFHFHPLL LSPDDDDPAA AVPLLPDETL  240
AVNLELYLHK LLKDRDKTRL FLLKIKAMNP RVVTVVEREA NHNHPIFLQR FIEAVDHYTA  300
VFDSLEATLP PASRERMVVE RLWFGREIAD IVAAEGDNRR ERHERFRSWE MMLRSSGFCN  360
VPLSPFALSQ AKLLLRLHYP SEGYQLHILN ASFFLGWQNH ILFSVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-624540825377Protein SCARECROW
5b3h_D3e-624540825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081242.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-127SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2R6P5A00.0A0A2R6P5A0_ACTCH; Scarecrow-like protein
STRINGXP_009765072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-126GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]