PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn079421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 410aa MW: 46072.6 Da PI: 7.1408 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 403.4 | 2.2e-123 | 38 | 409 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkf 93 +++lL++cAe +s +d+++a++l a ls + +sp+gd+++Rl++ ft+AL+ rla++v+ ++ + p +t++ + + +++ ++++v+P+++f Achn079421 38 MRQLLISCAELISRSDFAAAHRLSAILSANsSSPYGDSTERLVHQFTKALSLRLANTVPATATSNIPFPTPNVTllesdENFLHSSYLTLNQVTPFIRF 136 589**************************9899***********************999999888777777666676433444455566********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +hltaNqaIleaveg +vHi+Df++++G+QWp+L+qa+a+R +pp+lRiTg g+ +++ l++tg+ L+kfA +lg++f+f++l+ + +d Achn079421 137 GHLTANQAILEAVEGRPAVHILDFNVMHGVQWPPLMQAMAER-YPPPTLRITGTGH----DADLLRRTGNHLSKFALSLGLRFHFHPLLLSPDDDDPAA 230 *****************************************9.999**********....9***************************99999999999 PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 + + p+E+laVnl l lh+ll+++ + ++ +L +k ++P+vv+vve+ea+hn++ Fl+rf+ea+++y+a+fdslea+lp++s+er++vEr ++g Achn079421 231 AVPLLPDETLAVNLELYLHKLLKDRDK----TRLFLLKIKAMNPRVVTVVEREANHNHPIFLQRFIEAVDHYTAVFDSLEATLPPASRERMVVERLWFG 325 **********************55555....556***************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 rei ++va+eg++rrerhe++++W+++l+++GF +vpls +a +qaklllr ++ s+gy+++ ++s++lgW+++ L+svS+Wr Achn079421 326 REIADIVAAEGDNRRERHERFRSWEMMLRSSGFCNVPLSPFALSQAKLLLRLHYpSEGYQLHILNASFFLGWQNHILFSVSSWR 409 ***********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.018 | 12 | 388 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-121 | 38 | 409 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MLGSFGSSRE EAEDPSASHH HQIQQLPPGG FPSSATHMRQ LLISCAELIS RSDFAAAHRL 60 SAILSANSSS PYGDSTERLV HQFTKALSLR LANTVPATAT SNIPFPTPNV TLLESDENFL 120 HSSYLTLNQV TPFIRFGHLT ANQAILEAVE GRPAVHILDF NVMHGVQWPP LMQAMAERYP 180 PPTLRITGTG HDADLLRRTG NHLSKFALSL GLRFHFHPLL LSPDDDDPAA AVPLLPDETL 240 AVNLELYLHK LLKDRDKTRL FLLKIKAMNP RVVTVVEREA NHNHPIFLQR FIEAVDHYTA 300 VFDSLEATLP PASRERMVVE RLWFGREIAD IVAAEGDNRR ERHERFRSWE MMLRSSGFCN 360 VPLSPFALSQ AKLLLRLHYP SEGYQLHILN ASFFLGWQNH ILFSVSSWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-62 | 45 | 408 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-62 | 45 | 408 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028081242.1 | 0.0 | scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-127 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A2R6P5A0 | 0.0 | A0A2R6P5A0_ACTCH; Scarecrow-like protein | ||||
STRING | XP_009765072.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11298 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-126 | GRAS family protein |
Publications ? help Back to Top | |||
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