PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn076861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 999aa MW: 112625 Da PI: 5.4582 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Achn076861 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Achn076861 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 5.37E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.22E-20 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.20E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 4.2E-52 | 407 | 634 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 999 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRQR KRKRKGIDYN AEIPFEKKPP PGFFDVTDED RPVEQPKFPT 240 TIEELEGEKR SDKEARLRKQ DIARNKIAQR QDAPSAVLQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMNYASDLL TGSEELTEGS GATRALLANY SQTPRQGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGQNPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGG 420 VGMTPMLGMT PSRDAYSFGA TPKGTPIRDE LHINENTDMH DSAKLELRRQ ADLKRNLRSG 480 LSSLPQPKNE YQIVIPPVPE DSEEPEEKIE EDMSDRIARE RAEEEARQQA LLKKRSKVLQ 540 RELPRPPAAS VELIKNSLIR ADEDKSSFVP PTLIEQADEI IRKELLSLLE HDNAKYPLDE 600 KVDKEIKKGA KKTANRRSAS VPTIEDFEEE NLKEVMHAAR YGRIDTSFVI IYNLQIPKRQ 660 ADYLIKEEAQ FLRVAMGHEN ESPDEFVEAH KTCVNDIMYF PTRNAYGLSS VAGNTEKLAA 720 LQNEFENVKK RMDDDTKKAQ RLEQKIKLLT NGYQIRAGKL WSQIEATFKQ MDTVGTELEC 780 FQALQKQEQL AASHRVNGLL VEVQKQKELE RNLQKRYGDL MAEQERIQSL MDAYRVQEEI 840 AAKSHALELS NAAVKNETVV LSPETAVPVA GADELGHSIP VDPSHDEIPS QERDSAQVQA 900 HAGPQHEMDV IGMVDATEPL LQGNSNDSVN GTAVENVTST EVVKEDLVAK DHQNIVEDGI 960 QDGFLIKPED ARETAEDGRA NEDMQVSSMV DEANLQAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 829 | 3 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDNRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028094316.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A2R6PKF6 | 0.0 | A0A2R6PKF6_ACTCH; Cell division cycle 5-like protein | ||||
STRING | cassava4.1_000851m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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