PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn076461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 1153aa    MW: 126884 Da    PI: 4.4938
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn076461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.12e-12577011352373
        GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98  
                  ++ L++c+eav s++   +++++a+l +lasp+g+p+ Rl+ayft ALa r++r +++++++  p+e ++   +++ ++l+l+++vsPi+kf h+t 
  Achn076461  770 ISFLMACVEAVGSNNIVGINHFIAKLGDLASPRGSPISRLIAYFTDALALRVTRVWPNTFHITIPRELDP-VDDDSGTSLRLLNQVSPIPKFIHFTS 865 
                  678***********************************************************99999985.4566778899**************** PP

        GRAS   99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 
                  N+ Il+a+eg++rvHiiDfd+++GlQW  L+q+LasRp++p+++RiTg+g+    sk+ l etg+rL+ fA +l++pfef++ v+++l+d++l++L+
  Achn076461  866 NEIILKAFEGKDRVHIIDFDVKEGLQWTGLFQSLASRPNPPAHVRITGIGE----SKQDLIETGDRLTGFAGTLNLPFEFHP-VVDKLDDVRLWMLH 957 
                  ***************************************************....9**************************.7************* PP

        GRAS  196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 
                  vk++E++aVn+v+qlh++l++   ++   +++L l++s++P +v v+eqea+hn++s+  r++++l+yysa+fds++  lpr+s +rik+E+  ++r
  Achn076461  958 VKERETVAVNCVFQLHKMLHDGSGVAI--TNFLGLIRSTNPIIVLVAEQEAEHNEPSLESRVSNTLKYYSAIFDSIDLCLPRDSAARIKIEEN-FAR 1051
                  *******************87777777..99**************************************************************.*** PP

        GRAS  293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 
                  ei+nv+aceg+ r+erhe+++kWre +e+ G++++ + e++ +q ++ll++++ + ++ve   ++++ l+l W d+pL++vSaW
  Achn076461 1052 EIRNVIACEGSGRNERHERFGKWRELMERGGYRSLGIHERELNQSQMLLKMHNCENFSVEmqgQDRAGLTLSWLDQPLYTVSAW 1135
                  *****************************************************999****87778999**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.8.106.5E-10145No hitNo description
SuperFamilySSF469345.61E-5344IPR009060UBA-like
PfamPF145551.3E-8844No hitNo description
CDDcd143512.41E-13842No hitNo description
SuperFamilySSF542365.68E-9515555IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.902.4E-6522554No hitNo description
PfamPF007891.1E-4525553IPR001012UBX domain
PROSITE profilePS5003310.885525555IPR001012UBX domain
PROSITE profilePS5098557.367431113IPR005202Transcription factor GRAS
PfamPF035146.9E-1237701135IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MARPNQGAIE TFMSITGESE SVAAQKIEEH GGDLNEAVNA HFNGGYRSTM HETSTAAPQN  60
DAMDIDEPIQ VGFRPPPFSL LPSAGNLNLF SLLDPDISRS LFDSGPDSTS RAPFVSHPRE  120
MREIPIEVKD GGEQSGHSGP APTIEDVTGT TDAHGLETHG AIIIDDEVDE DIPTAPSGHV  180
AGQNEQGGDV PGSNSGGTYP RPSAPGIDDL PDYGIDIEEE MVRAAIEASK REIGQGYPDQ  240
QVGVHVDLTN PGNQQRQYRV EDAEIAHAVS LSLKSAEQEK ALREQGEKVG ASEVEAYMPT  300
VVGDVGKMVS SNGSSSLQDE AEDVEEQPLV RHSRHMSSAS VGSDKEAGEV EVTPPSSPGQ  360
QINISRPPNN RNDFHTDEWG GISSEEQDEA IMLEAALFGG IPEESEYRFP YAPHQFMQNG  420
LDSTSGLYPR RTPRPPSPGL TAQRLIREQQ DDEYLASLQA DREKELRALE EAEAQRLKEQ  480
AAREAALEEE RRKEEESRRK LEEEQEIERQ LAAKEVSLPQ EPTSDDEKAV TLLVRMPDGS  540
RRGRRFRKSD KLQLLEPKPN GCSLKQNIRL PPLATTSETT RRDIKDEFWG KDKSLKRFAE  600
KSSFENDDDD DDDASFIYRP KRKKRSENSD ETGDDSGLGQ LGSGSFWLNT AQFSLSLSCS  660
GEEGEERACF MPGALISPPL PIPNAPWADS VMTMITKFGD KDPGPSHRPV PEASGPSTSS  720
EAHQILSTNP NPSESGPELG NVGGLQNPIE GAELGAEYNP NEEEEGFELI SFLMACVEAV  780
GSNNIVGINH FIAKLGDLAS PRGSPISRLI AYFTDALALR VTRVWPNTFH ITIPRELDPV  840
DDDSGTSLRL LNQVSPIPKF IHFTSNEIIL KAFEGKDRVH IIDFDVKEGL QWTGLFQSLA  900
SRPNPPAHVR ITGIGESKQD LIETGDRLTG FAGTLNLPFE FHPVVDKLDD VRLWMLHVKE  960
RETVAVNCVF QLHKMLHDGS GVAITNFLGL IRSTNPIIVL VAEQEAEHNE PSLESRVSNT  1020
LKYYSAIFDS IDLCLPRDSA ARIKIEENFA REIRNVIACE GSGRNERHER FGKWRELMER  1080
GGYRSLGIHE RELNQSQMLL KMHNCENFSV EMQGQDRAGL TLSWLDQPLY TVSAWVPVDL  1140
GGASSSFSLL PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-65761113711380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2R6Q8A50.0A0A2R6Q8A5_ACTCH; Scarecrow-like protein
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-180GRAS family protein