PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn075201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 20394.5 Da PI: 4.8064 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 32 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++++g+Wv+eIr+p r r++lg+f t+e+Aa a++ a+++++g Achn075201 32 PVYRGVRRRRSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALAMRG 83 68*******************9.....4489************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-13 | 32 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.827 | 33 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 33 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-30 | 33 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 33 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.3E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-22 | 45 | 93 | No hit | No description |
PRINTS | PR00367 | 3.3E-8 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEHSSGGGWV GSTGGGRGNV AAGGARGSGR HPVYRGVRRR RSSGKWVSEI REPRSPNRIW 60 LGTFPTPEMA AVAYDVAALA MRGQDAELNF PNSASSLPVP ASMAPRDIQE AAASAAAAAG 120 AATDALAGST QAHLNETANP SAGGGGSEFV DEDLIFDMPN VLVNMAEGML LSPPRLDVAA 180 DHDTAAENAG DQNLWNFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 24 | 93 | 4 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028069670.1 | 3e-81 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 3e-60 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A2R6QW57 | 1e-139 | A0A2R6QW57_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_002528595.1 | 1e-72 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 1e-36 | ERF family protein |