PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn073021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19052.3 Da PI: 4.9621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 10 | 58 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grWv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g Achn073021 10 YHGVRLRS-WGRWVSEIRLPRQ---KSRIWLGSYPTAEMAARAHDVAALAIRG 58 99***998.**********943...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.01 | 9 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-30 | 9 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 9 | 58 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-34 | 9 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 10 | 21 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-20 | 10 | 67 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.61E-29 | 10 | 66 | No hit | No description |
PRINTS | PR00367 | 1.0E-8 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MAPTVTSRSY HGVRLRSWGR WVSEIRLPRQ KSRIWLGSYP TAEMAARAHD VAALAIRGQS 60 ATLNFPQLVH KLPYPATAAP KDIQAAAALA AAGKFDGFEI ENQAKTTSTT TSSCEGQDLG 120 RSLASESSDD VDALFDLPDL WVDSKMDSSN GLCFASWFNG IEIGFQIEEP FLWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 9 | 67 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028070570.1 | 4e-55 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 3e-45 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2R6RT30 | 1e-126 | A0A2R6RT30_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | cassava4.1_021971m | 3e-50 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-37 | ERF family protein |
Publications ? help Back to Top | |||
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