PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn071561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 132aa MW: 15281.5 Da PI: 5.044 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 141.5 | 8.6e-44 | 15 | 131 | 257 | 374 |
GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 + eal+yy+a+f+s++++lpre +erikvE+ +l+r++vnv+aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll++++ + yr+ee++ Achn071561 15 VEEALDYYTAMFESIDVTLPRERKERIKVEQNCLARDVVNVIACEGTERVERHELLGKWKSRFTMAGFSPYPLSSLVNATIKTLLENYNCK-YRLEERD 112 779**************************************************************************************88.******* PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g+l+lgW++r Lv+ +aW+ Achn071561 113 GALYLGWMNRDLVASCAWK 131 ******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.535 | 1 | 112 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-41 | 15 | 131 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 132 aa Download sequence Send to blast |
MEDLEFLKMV SDKSVEEALD YYTAMFESID VTLPRERKER IKVEQNCLAR DVVNVIACEG 60 TERVERHELL GKWKSRFTMA GFSPYPLSSL VNATIKTLLE NYNCKYRLEE RDGALYLGWM 120 NRDLVASCAW K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-15 | 18 | 131 | 258 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051844.1 | 8e-72 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_028051845.1 | 8e-72 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 2e-65 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2R6QWF7 | 1e-77 | A0A2R6QWF7_ACTCH; Scarecrow-like transcription factor | ||||
STRING | POPTR_0014s16230.1 | 1e-69 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21347 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 8e-68 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|