PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CPP
Protein Properties Length: 639aa    MW: 69724.2 Da    PI: 8.1598
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.7e-15178217242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ e+
  Achn069971 178 KQKHCNCKHSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEN 217
                 89**************************.********9875 PP
2TCR50.93e-16262301140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Achn069971 262 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 301
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.6E-19177217IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.165178302IPR005172CRC domain
PfamPF036386.5E-12179214IPR005172CRC domain
SMARTSM011147.5E-20262303IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12265300IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MYQMNLREGF RNSSHKEIYI YKYISIKSCP FIGSPITSNS PKSTTNTMQN LVKGHRQQEN  60
ILYNTVQEKL MEKGEGGDFP PKTDQSDSPS DFPAKKLARQ LDFTGFSSAS AAVVLPDHPQ  120
QSPVKPTPPQ PQPTPQQQLL STPKQSQLPL QSIRPVKPES PRARTRTSVE VKEGTPKKQK  180
HCNCKHSRCL KLYCECFAAG IYCDGCNCVN CHNNVENEAA RREAVEATLE RNPNAFRPKI  240
DGSPHGTRDN REEPGDALVL GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF  300
EGREERQALF HGDHTNSVAY IQQAANAAIT GAIGSSGYGS PPLSKKRKGQ ELFFGPTAKD  360
PSIHRLAQYQ QSSIPAARVN SATTGPSKFT YRSLLADIIQ PQDLKELCSV LTVFSAEAGN  420
TLADQRDAME RQAEDRMESS LASSAHDRLQ SQKECEVQKA VADDCSSANH AEKISPTSSD  480
GADLSKARPM SPGTLALMCD EQDTMFMAAA SPKGLMGHGR NTYSQLPHGQ GMTEVYAEQE  540
RVVLTKFRDC LNRLITLGEI KETTCSSLAR TDSGGQSEPI SNSAANARTE TKNQQEPSSN  600
GGAKSTGPPM PATSQTIHEV TIASNNDPPP KFLQKTGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-311703112132Protein lin-54 homolog
5fd3_B8e-311703112132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068712.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2R6QV030.0A0A2R6QV03_ACTCH; Protein tesmin/TSO1-like
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-170Tesmin/TSO1-like CXC domain-containing protein