PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn069961

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 280aa MW: 30409 Da PI: 7.5011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn069961	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00032	155	193	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Achn069961 155 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 193 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.979	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.41E-6	153	197	No hit	No description
SuperFamily	SSF47459	2.22E-10	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-8	157	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MNLVVNGCQI FAEATRKRKI RGGLLGEEEK SGLSHVQAKK LENWEEQGFH HEAPNNGPCG 60 ELNQDHNYVY GHVSVDHHYQ APAKPTNWSQ MMPASSPTSC VTSLSSSMLD FSNNKADERQ 120 PPPDRSSECN STATGGALKK AKVQPSSTPS TFKVRKEKLG DRITALHQLV SPFGKTDTAS 180 VLLEAIGYIR FLQSQVEALS LPYLGSGSGN MRRQQSVQGE RNCLFPEDPG QDSHGEPNKD 240 LRSRGLCLVP ISCTMQVGSD NGADYWAPAL SGGFQSKFC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284145.1	1e-131	PREDICTED: transcription factor bHLH68
Swissprot	Q8S3D1	1e-75	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2R6QV10	1e-162	A0A2R6QV10_ACTCH; Transcription factor bHLH68 like
STRING	VIT_11s0016g03560.t01	1e-131	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]