PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn069471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25255.8 Da PI: 4.9639 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 47 | 94 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Achn069471 47 IYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFETPEMAARAHDAAALTV 94 69****998.**********854...6*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.06E-22 | 46 | 106 | No hit | No description |
Pfam | PF00847 | 1.3E-12 | 46 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.906 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 47 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 47 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 47 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSSSESSSIN SDSSPSSSSG LQPKSPGPAQ TRPKRSRPES NNTKHPIYRG VRMRAWGKWV 60 SEIREPKKKS RIWLGTFETP EMAARAHDAA ALTVKGGSAV LNFPHLADLL PRPVTCLARD 120 VQAAAAKAAS MDHLGPSAAA TSSSSSSTET SEEQLSTAAT EELGEIVELP SLGSSYDSAE 180 SRSDFLFVDS VGVDVDGDGW VCYPHQWLHE DFLFFTSDHI TESAVSCDFE TSFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-19 | 45 | 109 | 12 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028075151.1 | 2e-74 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 3e-56 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2R6QUZ4 | 1e-168 | A0A2R6QUZ4_ACTCH; Dehydration-responsive element-binding protein | ||||
STRING | XP_004291182.1 | 1e-64 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 7e-47 | ERF family protein |
Publications ? help Back to Top | |||
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