PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn067521

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 323aa MW: 36149.3 Da PI: 9.3685

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn067521	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	289.7	1.2e-88	55	322	13	301
GAGA_bind 13 yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidsl 111 +y+ +++ + +++++m +iae+da+i e n a+ +k+aa+ e + a +qrd+a++ r+ a+ er+++++al ++ens++ +l g ++ +g k +++ Achn067521 55 QYQAKEANAFFMNKKIMHIIAEKDAAIDEMNRAINDKNAALEELNDAIKQRDEAITARDTAIRERESAIAALRFHENSMKGTL--GGGTNRGMKRVHHE 151 566553334459***************************************************************966554..55666777777755 PP GAGA_bind 112 qqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlP 209 q +++ + +++++ +++++k+kkk++ + k+++ k kk +e+ +++v++++ skae++ ++l + +v++Des + Achn067521 152 AQ-----ITEA---------IPISLVSSEPAKSQQSKQKKKKKAVLSSKSPR--KGKKVGEDLNRHVTTDG----SKAEWDAQNLgLIGEVHFDESIMS 230 55.....3332.........22345555556666666666555555555544..55566678888888877....89****55789***** PP GAGA_bind 210 vPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +PvCsCtG +rqCYkW nGGWqS+CCttt+S+yPLP+++++r++Ri+grKmS+++f++lL++Laa+Gydls pvDLk++WAkHGtn+++ti+ Achn067521 231 APVCSCTGEPRQCYKWANGGWQSSCCTTTLSMYPLPQMPNKRHSRIGGRKMSGSVFSRLLSRLAADGYDLSLPVDLKNYWAKHGTNRYITIK 322 *****************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.2E-109	40	322	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.6E-87	49	322	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MVEVICHGSY FDFIRCTSRW FGSLNSVTSC SKLFEVSESC ESREILLLYW NMMPQYQAKE 60 ANAFFMNKKI MHIIAEKDAA IDEMNRAIND KNAALEELND AIKQRDEAIT ARDTAIRERE 120 SAIAALRFHE NSMKGTLGGG TNRGMKRVHH EAQITEAIPI SLVSSEPAKS QQSKQKKKKK 180 AVLSSKSPRK GKKVGEDLNR HVTTDGSKAE WDAQNLGLIG EVHFDESIMS APVCSCTGEP 240 RQCYKWANGG WQSSCCTTTL SMYPLPQMPN KRHSRIGGRK MSGSVFSRLL SRLAADGYDL 300 SLPVDLKNYW AKHGTNRYIT IK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064148.1	1e-157	protein BASIC PENTACYSTEINE5-like
Refseq	XP_028064149.1	1e-157	protein BASIC PENTACYSTEINE5-like
Refseq	XP_028064150.1	1e-157	protein BASIC PENTACYSTEINE5-like
Swissprot	Q8S8C6	1e-105	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A2R6RHI4	0.0	A0A2R6RHI4_ACTCH; Protein BASIC like
STRING	XP_009804621.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9287	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-102	basic pentacysteine 4