PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn067421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 228aa MW: 26540.7 Da PI: 8.5749 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.3 | 3.5e-20 | 42 | 149 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 k+Y++Y+++ GF +r+++s+k +r++ +t+ fvC keg ++ +k +k++r+ ++ ++gC+a+l++k++k + kwevt + Achn067421 42 KYYEDYGRQNGFWIRTRTSSKGqNRSNDVTSVLFVCAKEGMYVRKAEKdgvkgndereeddkvlPKKRKRSYSTAKCGCNAQLRIKRDKwSLKWEVTFF 140 69************99888776477888************9988888889************998899999999************************* PP FAR1 82 eleHnHela 90 + HnH+l+ Achn067421 141 DDAHNHQLV 149 *******97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-17 | 42 | 149 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MEESFGLYDF EVEDLQTLNN DVERLEASSS GMFFETIEEA RKYYEDYGRQ NGFWIRTRTS 60 SKGQNRSNDV TSVLFVCAKE GMYVRKAEKD GVKGNDEREE DDKVLPKKRK RSYSTAKCGC 120 NAQLRIKRDK WSLKWEVTFF DDAHNHQLVT PSKRMKMKSN RHMPKAVKDL TEAFHTENLQ 180 ISKIASIFGG EYIGFDNRDC YNHLRNVRHR ELDGGDAQSV LTYFKNK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 106 | 111 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289266.1 | 3e-85 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024042736.1 | 4e-85 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M5WTQ7 | 3e-82 | M5WTQ7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10165 | 5e-83 | (Prunus persica) | ||||
STRING | XP_004289266.1 | 1e-84 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-19 | FAR1-related sequence 5 |