PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn065561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 21053 Da PI: 8.6318 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 6 | 56 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f+tae Aaka+++a+ ++g Achn065561 6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRIWLGTFDTAEAAAKAYDEAAIVMNG 56 59*****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.15E-20 | 6 | 63 | No hit | No description |
PROSITE profile | PS51032 | 21.443 | 7 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 7 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.4E-12 | 7 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVVQSKKFRG VRQRQWGSWV SEIRHPLLKR RIWLGTFDTA EAAAKAYDEA AIVMNGQNAK 60 TNFSVPTTPD TDKDIFTKDT PTMADILTAK LQKCCKYPSP SLTCLRLDTE NSRLGVWQKR 120 AGPRSDSNWV TRVQLGKREK MNYRPSESSS ATCPVEMGEE IEEENRLAMQ MIEELLNGNS 180 GELVPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 3 | 63 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00527 | DAP | Transfer from AT5G25390 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332787.1 | 2e-76 | ethylene-responsive transcription factor WIN1-like isoform X2 | ||||
Swissprot | Q3E958 | 9e-67 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | A0A2R6QMK3 | 1e-109 | A0A2R6QMK3_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_006427266.1 | 1e-74 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25390.2 | 3e-60 | ERF family protein |
Publications ? help Back to Top | |||
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