PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn064821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 248aa    MW: 28120.8 Da    PI: 6.9393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn064821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++++ + G+ +W+  ar  g++Rt+k+c++rw++yl
       Achn064821  8 KGPWTSEEDLKLINCISMRGPAHWTYLARSAGLKRTGKSCRLRWLNYL 55
                     79********************************************97 PP
2Myb_DNA-binding45.51.8e-1461104146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++  lG++ W++Ia++++ gRt+k++k+++++
       Achn064821  61 RGNLTLQEQLLILHLHSHLGNR-WSKIAQHLP-GRTEKEIKNYYRT 104
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.252355IPR017930Myb domain
SMARTSM007171.4E-9757IPR001005SANT/Myb domain
SuperFamilySSF466891.02E-267102IPR009057Homeodomain-like
PfamPF002497.8E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-19962IPR009057Homeodomain-like
CDDcd001671.02E-71055No hitNo description
PROSITE profilePS5129421.32456110IPR017930Myb domain
SMARTSM007171.6E-1260108IPR001005SANT/Myb domain
PfamPF002492.4E-1361104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2163108IPR009057Homeodomain-like
CDDcd001675.61E-781104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMMIEERKGP WTSEEDLKLI NCISMRGPAH WTYLARSAGL KRTGKSCRLR WLNYLHPDLK  60
RGNLTLQEQL LILHLHSHLG NRWSKIAQHL PGRTEKEIKN YYRTRVQKLA KQLKWDINSS  120
QFRHAMRYYW LPTLADQVQA SSAQSSMAQP TTSSNQFTDN LPLTGLGPVD SDSKSGSLEA  180
QVSPASDLTC PCDVMGYNWM DGFQQDGPII GPMSPACSID GYYELEGLDG HILDEESSDI  240
WSTTYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2481087106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432352.11e-68PREDICTED: transcription factor MYB108-like
SwissprotQ10MB47e-64MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2R6QDC21e-172A0A2R6QDC2_ACTCH; Transcription factor like
STRINGXP_009612140.11e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-54myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]