PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn064731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 271aa    MW: 30315 Da    PI: 7.1286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn064731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.4e-33143200259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+ver+  dp++v++tYeg+H+h+
  Achn064731 143 EDGYRWRKYGQKAVKNSPFPRSYYRCTYSTCNVKKRVERCLGDPSIVITTYEGKHTHP 200
                 8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35127202IPR003657WRKY domain
SuperFamilySSF1182909.68E-30134202IPR003657WRKY domain
PROSITE profilePS5081130.676137202IPR003657WRKY domain
SMARTSM007745.9E-40142201IPR003657WRKY domain
PfamPF031061.0E-26143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEWKAAVKIE DPIRSTPFTD HFPLSDLFDG EKSSLGFMEL LGIQNFSPSI FDAMFQVSTP  60
SIEPVGPIQT STVAESSEVL NQPTTPNSSI SSASNEEQSR AVEEEEENQK TKKQLKTKKG  120
SQKKGEREPR YAFMTKSEVD HLEDGYRWRK YGQKAVKNSP FPRSYYRCTY STCNVKKRVE  180
RCLGDPSIVI TTYEGKHTHP SPVMHRPTSD VASPGFSASG ASIAYAPRVQ VAMPLHDQPQ  240
LINNLRFQNP TYADYGLLQD IVPSLTKKED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27132203778Probable WRKY transcription factor 4
2lex_A8e-27132203778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1485505e-35BT148550.1 Medicago truncatula clone JCVI-FLMt-13B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117835.17e-94WRKY transcription factor 23-like isoform X2
SwissprotO229001e-52WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2R6QDB20.0A0A2R6QDB2_ACTCH; WRKY transcription factor 23
STRINGXP_010259241.11e-81(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-47WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]