PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn064091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SBP
Protein Properties Length: 349aa    MW: 37218.9 Da    PI: 8.4821
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn064091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22.1e-4261136176
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                 +CqvegCe+dls+ak y++rhkvC+vhsk+p+v+v gle rfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Achn064091  61 RCQVEGCEVDLSDAKAYYSRHKVCDVHSKSPKVIVGGLELRFCQQCSRFHQLPEFDQGKRSCRRRLADHNERRRKP 136
                 6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-3555123IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.29159136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-4060140IPR004333Transcription factor, SBP-box
PfamPF031109.8E-3362135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGSGSSSSSD SLHGLKFGHK IYFDDSGGGG PPSASALGGR PPAAAPRKGR SGAVHGGQPP  60
RCQVEGCEVD LSDAKAYYSR HKVCDVHSKS PKVIVGGLEL RFCQQCSRFH QLPEFDQGKR  120
SCRRRLADHN ERRRKPPSGS LLAQRFGHLS SSIFENSRGG GYLMDFSTYP RLTGRDPWAT  180
TKAPDRVSGN QVTTTGKFLA HPWQSESENL PSDLFLQGSA SEPGSYSGLT IPSGECFTGV  240
SGSGYALSLL SNQHGGSRDR SLNLGVDNFT NAGGTRVVQL ATTQGGATNH FSTASWGFKS  300
YEAGGGSHDE VPANNQYLGG LELAQQSPEL EQHSRAYDSS TQHMHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30621351184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078083.11e-157squamosa promoter-binding-like protein 14
TrEMBLA0A2R6R5600.0A0A2R6R560_ACTCH; Squamosa promoter-binding-like protein
STRINGEOY094561e-138(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-52squamosa promoter binding protein-like 9