PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn063291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 433aa    MW: 47050 Da    PI: 5.0563
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn063291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.11.2e-05242337
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                e+ C+ ++  ++ ++C++++  lC  C +  H+       H
  Achn063291  2 EPLCEFCSLARAMIYCKSDSARLCLRCDTCVHSAnylsrrH 42
                689***************************99545555556 PP
2zf-B_box18.63.9e-064672430
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCl 30
                 +C+++++++++  C+d ++ +C++C 
  Achn063291 46 LICDKCNSQPAIVRCFDEKMSMCRSCD 72
                68************************7 PP
3CCT62.71.1e-21376419144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Achn063291 376 RDKAKMRYNEKKKTRMFGKQIRYASRKARADTRKRVKGRFVKAG 419
                 899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3147IPR000315B-box-type zinc finger
SMARTSM003367.9E-8147IPR000315B-box-type zinc finger
SMARTSM003362.74889IPR000315B-box-type zinc finger
PfamPF062035.1E-17376418IPR010402CCT domain
PROSITE profilePS5101714.684376418IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEPLCEFCSL ARAMIYCKSD SARLCLRCDT CVHSANYLSR RHARSLICDK CNSQPAIVRC  60
FDEKMSMCRS CDWKSGNGCS GLGHSRQTLG CYSGCPSQAE FSGIWASALD VPPSSGGFCG  120
GWGTISMLPI DENCLSHCLE PTGNEESVGL VGNKLNELQP CGKFEPWIGP SPVIPPSLNI  180
LPQYSKDQTL FVPDGSNLPK DHSTFKNLEI NDGDDLCEGL NMDDVALSFE SCDEIFDSSR  240
GYPAYNFEEG ATNCQLMEKN ASVAEPNSHI ENDLEASSPG QQECMAFQSS HVAGSANLMQ  300
AMSGSTNGIL LNPGCCRNIN IGFPTAPVPS SISLSLSNIT GEGSVADYQD CGLSPMFLTG  360
ESQWDSSLEI GCPQARDKAK MRYNEKKKTR MFGKQIRYAS RKARADTRKR VKGRFVKAGE  420
AYDYDPLVTT NM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056013.10.0putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A2R6QWA00.0A0A2R6QWA0_ACTCH; Zinc finger protein like
STRINGevm.model.supercontig_8.2390.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.15e-98B-box type zinc finger protein with CCT domain