PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn062021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 407aa    MW: 44256.3 Da    PI: 5.4993
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn062021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06544639
    zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                C+ ++e++   +C+++  +lC +C  + H+       H++
  Achn062021  5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                *****************************65677777765 PP
2zf-B_box23.11.6e-074689441
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 +C++++++++   C + ++ lC++C   +H g      H++++
  Achn062021 46 LVCERCNSQPAFVRCVEERVSLCQNCDWLGHAGsnpaskHKRQT 89
                68*****************************8889999998865 PP
3CCT63.95e-22349392144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R  a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+ 
  Achn062021 349 RSSAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 392
                 889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.613147IPR000315B-box-type zinc finger
CDDcd000212.14E-7447No hitNo description
SMARTSM003363.9E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9444390IPR000315B-box-type zinc finger
CDDcd000211.23E-54790No hitNo description
SMARTSM003360.214890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.527349391IPR010402CCT domain
PfamPF062038.1E-17349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGYLCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC  60
VEERVSLCQN CDWLGHAGSN PASKHKRQTV NCYSGCPSAA ELSTIWSFVS DIPSVTDSTC  120
EKGLSSMSIT DNSLTNCGGP LQSNDGQDAS VLVEENDLKN IDKSSVWTES SSVPQLNTKP  180
QNVDKEMGLA NSTSSKMCCP GTKAPVQHED DGFYEDFNMD EIDLDIENYE ELFGVALNDP  240
QQLFGNDGIG SLFGVKNLSG SDLNCQGAYA TQDSSMMQPA CSNAASADSM MSSKTDPNLC  300
FGRQAHSNLS FSGLTGESNG GDYQDCGASS MLLMGEPPCA ESSMPSTSRS SAVMRYKEKK  360
KTRKFEKKVR YASRKARADV RKRVKGRFVK AGEAYDYDPL GKTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121733.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_028121734.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-142COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2R6QWE30.0A0A2R6QWE3_ACTCH; Zinc finger protein like
STRINGEOX935730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-116B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]