PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn060771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 27461.5 Da PI: 4.4275 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.7e-13 | 48 | 91 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er RR+++N++++ Lr+++P+ + K++Ka+i + A++YI++L Achn060771 48 IVAERDRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQEL 91 578*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.825 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 42 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.18E-14 | 45 | 96 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 48 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-15 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-11 | 48 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Hamap | MF_01478 | 11.522 | 135 | 257 | IPR027534 | Ribosomal protein L12 family |
Pfam | PF00428 | 5.1E-12 | 207 | 256 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006414 | Biological Process | translational elongation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MENDLVSKSQ LKPNLEISNS WGLDEALSGY YDSSSPDGAQ SSAASKNIVA ERDRRKKLNE 60 RLFALRSVVP NISKMDKASI IKDAIDYIQE LHDQERRIQA EILELESGKI CDSEEEIPAL 120 LRSKKKKIDQ TFDSGEMGVF TFVCRSSGGD WSAKQLSGEL EAAATSTYEL QRKLVQVALS 180 ADSSGGVHTS FSLITPSSAV FQVIIGGGSG GAFIGSGASA AAAPAVAASA AEAPPAEEKK 240 AEKEESEDED MGFSLFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 47 | 107 | 9 | 69 | Transcription factor MYC2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 3e-41 | bHLH family protein |