PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn059721
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 515aa    MW: 56837 Da    PI: 5.2528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn059721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.82.7e-841405121374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfsh 95 
                 lv+ Ll+ Ae v +++ ++a++lL++  e +s +g+p+qR++ yf eAL+ ++ r ++++++k +  ++  + +   +s  laa  +f++  P+ +++ 
  Achn059721 140 LVQNLLASAEKVGQQQYNCASKLLSQCDESSSDTGNPVQRVVYYFSEALRGKIDReTGKSTSKGMGKQQLLDIEralVSPDLAAIVAFHQKVPFCQVCE 238
                 6899***************************************************88899999996666654445678999999999************ PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 +   qaI e v+g+++vH iD++i +G+Q   L+qaLa R+e p   l+iT+++    +sk +leetgerL  fA+++++p +f++++++++ dl+ + 
  Achn059721 239 FYGIQAIIEHVSGAKKVHLIDLEIRNGMQCTVLMQALAGRSECPLeLLKITALAT---KSKSKLEETGERLMGFANSMNIPYSFRIVMVSDMLDLKEDL 334
                 *****************************************7665499*******...68*************************************** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 ++++ +E+ aVn   +l +ll+ +  le     +++++++++P ++ v e ea+hns+ F +rf+eal  y a+fd+l   + + +  r++ E  +++ 
  Achn059721 335 FDLEAEETNAVNATCSLRSLLATPDRLET----LMRVLRNINPCIMAVNETEANHNSPFFGHRFIEALFSYGAVFDCLGGCMDQSDPIRKVSESTYISA 429
                 *********************66666666....****************************************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +i n+va+eg+er+ rh + + Wr  + ++G+ + +ls++   qa+ ++++++ +   + + + ++l++gWk+ p+ s+SaW+
  Achn059721 430 AILNIVAAEGEERIVRHVNISVWRTFFARFGMVEEELSTSLLYQASVVVKNCSgGSSCSFHMDGKCLIIGWKGTPIHSLSAWK 512
                 *****************************************************8888999999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.631114491IPR005202Transcription factor GRAS
PfamPF035149.2E-82140512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGLMDDLYVD IVSPPFQSYH CEILPELDSA HSENSLLDED KMENPCAIPL SSLGILKNYG  60
SGFRRLSGER IKVPSYGTTC SKPIPKVNGQ KLSTEDILCL AGKRFVQSSS QRIDDISALS  120
HPFDTSFLGL SYDETKDVEL VQNLLASAEK VGQQQYNCAS KLLSQCDESS SDTGNPVQRV  180
VYYFSEALRG KIDRETGKST SKGMGKQQLL DIERALVSPD LAAIVAFHQK VPFCQVCEFY  240
GIQAIIEHVS GAKKVHLIDL EIRNGMQCTV LMQALAGRSE CPLELLKITA LATKSKSKLE  300
ETGERLMGFA NSMNIPYSFR IVMVSDMLDL KEDLFDLEAE ETNAVNATCS LRSLLATPDR  360
LETLMRVLRN INPCIMAVNE TEANHNSPFF GHRFIEALFS YGAVFDCLGG CMDQSDPIRK  420
VSESTYISAA ILNIVAAEGE ERIVRHVNIS VWRTFFARFG MVEEELSTSL LYQASVVVKN  480
CSGGSSCSFH MDGKCLIIGW KGTPIHSLSA WKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-311405124375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060869.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PWP70.0A0A2R6PWP7_ACTCH; DELLA protein
STRINGEMJ259710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-57RGA-like 2