PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn059711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 564aa    MW: 63464.8 Da    PI: 4.8611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn059711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.56.8e-841895611374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.....fsevsPilkf 93 
                 lv+ Ll+ Ae v +++  +a++lL++  el+s +g+p+qRl+ yf eAL++++ r ++ ++ k+l  ++  +   +e++a  +l     f++ +P+ ++
  Achn059711 189 LVQNLLASAEKVGQQQYDRASKLLCQCYELSSDTGNPVQRLVYYFSEALREKVDReTGRTTPKSLGEKQLLD--LQEAIACPNLaslitFHQQTPFSQV 285
                 6899***************************************************55666666665554442..444444333334445********** PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                 s +   qaI e v ++++vH i ++i+ GlQ   L+qaLa R+e p   l+iT+vg    + + ++eetgerL +fA+++++pf+f+v++++++ +l+ 
  Achn059711 286 SIFPGMQAIIERVVEAKKVHLIELEIKSGLQCTILMQALAGRSECPLeLLKITAVGT---KARSTIEETGERLMSFAQSINLPFSFKVVMVSDFLNLHE 381
                 *******************************************7665499*******...56999********************************** PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                 + ++++++E++a+n    l  +l    +++++ +++++++++++P ++ v+e ea+hns+ F++rf+eal ++ a fd+le  + +++ +r++ E  ++
  Achn059711 382 DLFELEEEETVAINAPCCLWPML----AIPDRLERLMRVLRRMNPCLMAVIEVEANHNSPVFVNRFIEALFFFGAYFDCLEDCMDQNDPNRKMSESGYF 476
                 **********************9....56666666**************************************************************** PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++ i n++a+eg+er+ rh + + Wr+ + ++G+ + +ls++   qa+l++++++ +   +++ + ++l++gWk+ p+ svSaW+
  Achn059711 477 SQTIHNIIAAEGEERIIRHVNISVWRAFFARFGMMEEELSTSSLYQASLVVKNFAcGSSCTLDMDGNCLIIGWKGTPIHSVSAWK 561
                 *******************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.243163540IPR005202Transcription factor GRAS
PfamPF035142.4E-81189561IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MHAECRPLRY IEHINVERPY DLKILGNSAE DGLLFSNYQQ EHQQHSVSDF GILDDLYLDM  60
VSPPFQSSLE ETTKISSFHA ENLLLDEPKK EKPCATPLES SLGILKNYGS GFRRLNLEKI  120
KVPSYVTACT KPEPMVAGRK LSIEAVLRLE GEKFIQSSSQ GVDELSMLSH PFGSSFLGLS  180
DEETKDVELV QNLLASAEKV GQQQYDRASK LLCQCYELSS DTGNPVQRLV YYFSEALREK  240
VDRETGRTTP KSLGEKQLLD LQEAIACPNL ASLITFHQQT PFSQVSIFPG MQAIIERVVE  300
AKKVHLIELE IKSGLQCTIL MQALAGRSEC PLELLKITAV GTKARSTIEE TGERLMSFAQ  360
SINLPFSFKV VMVSDFLNLH EDLFELEEEE TVAINAPCCL WPMLAIPDRL ERLMRVLRRM  420
NPCLMAVIEV EANHNSPVFV NRFIEALFFF GAYFDCLEDC MDQNDPNRKM SESGYFSQTI  480
HNIIAAEGEE RIIRHVNISV WRAFFARFGM MEEELSTSSL YQASLVVKNF ACGSSCTLDM  540
DGNCLIIGWK GTPIHSVSAW KFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-371895614375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060869.10.0DELLA protein RGL1-like
TrEMBLA0A2R6PVU90.0A0A2R6PVU9_ACTCH; DELLA protein
STRINGEMJ259710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-44RGA-like 2