PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn057551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 310aa    MW: 34794.4 Da    PI: 9.0927
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn057551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.81.8e-2412972103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++++sw e+ ++fvv+ ++efa+++Lp++Fkh+nf+SF       gF+k+  ++         weF+++ Fkkg+k+ll++i+
    Achn057551  12 FLTKTYQLVDDPSSDHIVSWGEDDTTFVVWRPQEFARDLLPNFFKHNNFSSF-------GFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 92 
                   9**************************************************9.......9*****999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn057551  93 RRKTS 97 
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-26389IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.8E-46894IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.69E-25994IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-211294IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-111235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-115062IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNKSHKAVPA PFLTKTYQLV DDPSSDHIVS WGEDDTTFVV WRPQEFARDL LPNFFKHNNF  60
SSFGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTSQPL PPQGAGVNHH FSHPIGGGGG  120
GLSFFPYPGG RVSVSPPDSD EQQKTNWCDS PPRMPSASVS VGCSGAVTAL SEDNERLRRS  180
NNMLMSELAH MRKLYNDIIY FVQNHVKPVA PSNAYPSSLL LPNGTTPLMV QKPVNNLIGF  240
NQYSSPNYKQ VLHNEDSESN IVRTKLFGAP LQSKKRLHSE YSSSMETNKA RLVLEKDDLR  300
LNLMPPSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-1489717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639521e-51AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993541e-51AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAP0046711e-51AP004671.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524G08.
GenBankAP0052921e-51AP005292.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1340_C08.
GenBankAP0149631e-51AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY3444941e-51AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
GenBankCP0126151e-51CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879895.11e-141heat stress transcription factor B-4-like
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2R6S0N90.0A0A2R6S0N9_ACTCH; Heat stress transcription factor B-4 like
STRINGVIT_18s0001g10380.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-101heat shock transcription factor B4