PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn055151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 410aa    MW: 44862.5 Da    PI: 6.1959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn055151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-173681147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd +l + v ++G ++W++Iar ++ gR++k+c++rw + 
       Achn055151 36 RGPWSPEEDAILSRFVSEFGAKNWNAIARAIP-GRSGKSCRLRWINQ 81
                     89******************************.***********985 PP

2Myb_DNA-binding44.63.2e-14112150747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      eE+ +++ a+ +lG++ W++Ia+ ++ gRt++ +k++w++ 
       Achn055151 112 EEEHIILAAHVKLGNK-WSLIAKVLP-GRTDNAIKNHWNST 150
                      9***************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.463186IPR017930Myb domain
SMARTSM007171.7E-153584IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-283686IPR009057Homeodomain-like
PfamPF002491.1E-163681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-223792IPR009057Homeodomain-like
CDDcd001679.38E-153880No hitNo description
PROSITE profilePS5129416.989101155IPR017930Myb domain
SMARTSM007176.3E-8104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-16111152IPR009057Homeodomain-like
CDDcd001677.32E-9111148No hitNo description
PfamPF002497.7E-12112149IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-28123152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MKDGDQTDPP LLAADGGSGG DPALEGIGDD GGSRVRGPWS PEEDAILSRF VSEFGAKNWN  60
AIARAIPGRS GKSCRLRWIN QLDPCVKHKP FTVNSLGTRY KWKISDVISL DEEEHIILAA  120
HVKLGNKWSL IAKVLPGRTD NAIKNHWNST MRRKYMGLKR VKLTSSNILD EGSQDRRRAS  180
SEETLSCEDL NLIRSLEGKD VRLLENRCNQ SEDKVQIDED HRAAEKTHPT LSHAVARVGA  240
FSVYNPVNGP ITGSIFSRTV PMQGPLIQTL KPDTGSCKFL EGVCGEPIVP LQCGHGCCSA  300
PSGGVSQRSL LGPEFIEYEE PLPFLSYEFA AFATDLNSIA WIRSGLESTG TQVGDDARGQ  360
RMSNGDPTEL TGIFEQNMNH DHFRFEEARK RLMGTMAGFS LPAEVEGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-33351543104C-Myb DNA-Binding Domain
1msf_C1e-33351543104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078108.11e-163transcription factor MYB25-like
TrEMBLA0A2R6RR980.0A0A2R6RR98_ACTCH; Transcription factor like
STRINGXP_010262707.11e-141(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-88myb domain protein 109