PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn055051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27161.1 Da PI: 6.5051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 3 | 52 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Achn055051 3 KYRGVRQRS-WGKWVAEIREPRK---RRRRWLGTFSTAEDAAAAYDRAAVILYG 52 7*****999.**********954...5*********************987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-10 | 3 | 47 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 3 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-29 | 3 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.82E-13 | 3 | 62 | No hit | No description |
SMART | SM00380 | 1.0E-35 | 3 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.023 | 3 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-10 | 4 | 15 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-10 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MFKYRGVRQR SWGKWVAEIR EPRKRRRRWL GTFSTAEDAA AAYDRAAVIL YGQRAQLNLQ 60 PSPAPISSGG GGGSSSARGG GSSSSSTQTL RPLLPRPPNF SVTFPPYSST LPSPYSNIYD 120 TVQFSTAVQS PCQLSQIVPS CTNHVHSDAI AASAATTMDA SSPLLSSYPI PYYDPQSHHP 180 NYLYEQINSL VGSVDSSLCL SSHHVVEPAV SDPTVAAVET SAVGSPVIWP VTSDDDYPPA 240 SIWDYGDPSF DF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-18 | 4 | 69 | 6 | 69 | ATERF1 |
3gcc_A | 5e-18 | 4 | 69 | 6 | 69 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821683.1 | 8e-56 | PREDICTED: ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A2R6RR87 | 0.0 | A0A2R6RR87_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | VIT_13s0067g01400.t01 | 2e-52 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 7e-16 | ERF family protein |