PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn052901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 503aa    MW: 55987.8 Da    PI: 5.6687
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn052901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.23.3e-1381325021374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+ +s++dl  aq+l+a+l++l+s +g+p+qRl ay++e+L arla+s++ +yk+l+++e +   s+e l+++++++ev+P++kf+++ aN
  Achn052901 132 LKQVLVACAKSISENDLLTAQWLMAELRQLVSVSGEPIQRLGAYMLEGLVARLASSGNLIYKSLRCKEPA---SAELLSYMHILYEVCPYFKFGYMSAN 227
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++p+s   +   l+ +g+rL+++A++++vpfef   +  +  d+++e+L +
  Achn052901 228 GAIAEAMKNENRVHIVDFQIGQGSQWVTLIQAFAARPGGPPHIRITGLDDPASAyaRGGGLNIVGQRLSRLAKSFKVPFEFCG-APISGCDIQPENLGI 325
                 ***************************************************99999999************************.788999********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + gEalaVn+++ lh+++desvs++++rd++L+lvks+sPkvv++veq +++n++sF+ rfleal+yy+a+f+s++++lpre +eri vE+++l+r++v
  Achn052901 326 RAGEALAVNFAFVLHHMPDESVSTRNHRDRLLRLVKSVSPKVVTLVEQVCNTNTASFFPRFLEALDYYTAMFESMDVTLPRERKERIYVEQHCLARDVV 424
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll++++++ yr+ee++gsl+lgW++r Lv+ +aW+
  Achn052901 425 NVIACEGTERVERHELLGKWKSRFTMAGFSPYPLSSLVNATIKTLLENYSDK-YRLEERDGSLYLGWMNRDLVASCAWK 502
                 **************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.593106483IPR005202Transcription factor GRAS
PfamPF035141.1E-135132502IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSNTLYYQPV QEVEAYCFPQ HQLCYSPLES SSASGYCAVY NSPSTVTFSP SGSPMSQQES  60
QSDNIYGSMI SGSCVTDDVN EFRHKLQELE NVMLGPDSDI PGSYDSTLQG GVVSPEIDSW  120
REMMEAIPKR DLKQVLVACA KSISENDLLT AQWLMAELRQ LVSVSGEPIQ RLGAYMLEGL  180
VARLASSGNL IYKSLRCKEP ASAELLSYMH ILYEVCPYFK FGYMSANGAI AEAMKNENRV  240
HIVDFQIGQG SQWVTLIQAF AARPGGPPHI RITGLDDPAS AYARGGGLNI VGQRLSRLAK  300
SFKVPFEFCG APISGCDIQP ENLGIRAGEA LAVNFAFVLH HMPDESVSTR NHRDRLLRLV  360
KSVSPKVVTL VEQVCNTNTA SFFPRFLEAL DYYTAMFESM DVTLPRERKE RIYVEQHCLA  420
RDVVNVIACE GTERVERHEL LGKWKSRFTM AGFSPYPLSS LVNATIKTLL ENYSDKYRLE  480
ERDGSLYLGW MNRDLVASCA WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6313950126378Protein SCARECROW
5b3h_A5e-6313950125377Protein SCARECROW
5b3h_D5e-6313950125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094352.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2R6QCW90.0A0A2R6QCW9_ACTCH; Scarecrow-like transcription factor
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]