PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn052461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 342aa    MW: 38053.3 Da    PI: 4.8838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn052461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19127176255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdp     r  r +lg+f+taeeAa  +++a+ +l+g
  Achn052461 127 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFDTAEEAAMVYDHAAIQLRG 176
                 89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-30126184IPR001471AP2/ERF domain
PROSITE profilePS5103223.578127184IPR001471AP2/ERF domain
SMARTSM003801.4E-37127190IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21127184IPR016177DNA-binding domain
CDDcd000183.09E-32127183No hitNo description
PfamPF008479.3E-12127176IPR001471AP2/ERF domain
PRINTSPR003671.7E-10128139IPR001471AP2/ERF domain
PRINTSPR003671.7E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEPSMLCPVK HSELRKQTNM VWSSPPVDFS GRTKLPEMSS GGPRVVRITV TDADATESSS  60
DEEDVGFRHR RVKKFVNEVK IESPSRKNGE ITGYRSKTAA KARNRQKRSA GKLKIPAGKF  120
KLSSGRKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTFDTA EEAAMVYDHA AIQLRGPDAL  180
TNFTCPQKTA QNSLENPSST ISGYNSGEES HNHDFPSPTS VLRFDLAPET ESSQSQPPND  240
AVSCCPDFKD DVSVSETFSD FSPVDTIFPD GDFYFEDPVP DLSEIFDWPG LQENFFDEDC  300
ENLFLGSGDV FGYGKTTLPT DDYLRFPDIG DLFGSDPLVA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20123183162ATERF1
3gcc_A2e-20123183162ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107RNRQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106981.11e-117ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2R6Q8L40.0A0A2R6Q8L4_ACTCH; Ethylene-responsive transcription factor
STRINGXP_009763317.11e-105(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.28e-56cytokinin response factor 2