PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn052151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 33110.4 Da PI: 4.7222 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 47 | 70 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia++++ gRt++++k++w+++ Achn052151 47 RWAHIASHLP-GRTDNEIKNYWNSW 70 4*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.28E-8 | 43 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-7 | 45 | 71 | No hit | No description |
Pfam | PF00249 | 3.3E-7 | 46 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 46 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.516 | 46 | 71 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTLSSICHPF NDRNEYFGLI EMNSLNLTSN VKVAISSICC PIKSVNRWAH IASHLPGRTD 60 NEIKNYWNSW IKKKIRKPLA PPATNKPNPN HRYSLFGSTA NQHHQVDFLN QDLLTKPPVL 120 DELFSSPSAF FMFDTSSILA GISTDGGNER GEIFRELNCE TWHMNQQQVT TLPSKTCFTT 180 SMDSNCLPPL IENMESMVPI EMQGCNINEE KEMAMECLQR QELNEWVESQ TCPSFLFWDH 240 VEGPLGPQMN NAAKCDVWSE YLDSRINEAA LGGEEVEPTS SNMGITLSSL PSSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028079608.1 | 1e-88 | transcription repressor MYB6-like | ||||
TrEMBL | A0A2R6Q8G1 | 0.0 | A0A2R6Q8G1_ACTCH; Transcription factor like | ||||
STRING | VIT_02s0025g00320.t01 | 1e-83 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12439 | 17 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 6e-30 | myb domain protein 103 |