PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn050881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CPP
Protein Properties Length: 389aa    MW: 43529.5 Da    PI: 8.7604
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn050881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53e-141049242
         TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                e+k+C+Ck+s+C+k+YCeCf++g++C+  C+C +C+N+ e+
  Achn050881 10 EQKPCKCKQSRCVKLYCECFSSGTYCEG-CRCINCQNNVEN 49
                79*************************9.********9875 PP
2TCR49.96.5e-1694134242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++kgC+Ckks Clk+YCeCf+a+  Cse+CkC dCkN +++
  Achn050881  94 KHKGCQCKKSGCLKRYCECFQAKILCSENCKCVDCKNFKKH 134
                 579**********************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.1E-16949IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.12210133IPR005172CRC domain
PfamPF036389.1E-111146IPR005172CRC domain
SMARTSM011143.7E-1793134IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.0E-1396131IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEVNDSATKE QKPCKCKQSR CVKLYCECFS SGTYCEGCRC INCQNNVENE ATRAVAILNT  60
LERNPNAFRT KIGNSPHRTL DKEVEAKNSL QVVKHKGCQC KKSGCLKRYC ECFQAKILCS  120
ENCKCVDCKN FKKHEERSDL SNGSNPESIA FIKQTNSAII GAIGFSGYRS FRKSRKRKDR  180
DNLPGSNTED PQICQLMKDK QTQRKNHFPL TRVAGYGRRS LLAGTIQQQD MRELCSILMV  240
VAQASTILAD QNDSIQTVRE NQTATFLANR DEENFHKGPE VHKATPNAYL GRDHENKYGK  300
VNSHPGDADA QKWTPMSPGT VALLCDENNG LFTLDASSGR VKNCVSNTDI HIQQERLVLM  360
KFRDCLNRLI TRGNVKGSSM PAPMELVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2821402130Protein lin-54 homolog
5fd3_B2e-2821402130Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178RKSRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127402.11e-168protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A2K2A3651e-112A0A2K2A365_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-93Tesmin/TSO1-like CXC domain-containing protein