PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn050241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 60280.1 Da PI: 6.2029 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 256.7 | 8.3e-79 | 160 | 536 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL cA av++g+l+++q+lL l+elasp+gd+++Rlaa+ ++AL + l++ vs++++ + s+t+ + ++l f evsP++ f + +aN Achn050241 160 EQLLNPCAAAVTAGNLTRVQHLLYVLHELASPSGDANHRLAAHGLRALTHLLSSPVSSVSQGPiNFSSTK---PQFFQKSLMRFDEVSPWFMFPNKIAN 255 689***************************************************9999987652444444...5666666667**************** PP GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakr 185 + Il+ ++++ + +Hi+D+++s+G+QWp+Ll+aL+ R+ + pp +R+T+vg+++ + + + ++L +A+++++++++n l Achn050241 256 NSILQILSEQdqsRNLHILDIGVSHGVQWPTLLEALSRRSgGAPPLVRLTVVGAATDHdritdnpfvISPPGYSFTSQLLCYAKSININLQINRLDNLP 354 ******9988776889************************55677*********99889999988886667778889999**************9888* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpresee 281 l++l+ e ++++p+E+l+V+ +++lh+l ++ +++r+e+L+++++l+Pk vv++e+++d+ + ++F+++f++ +ey + ++ds +a + + Achn050241 355 LQNLNAEIINFSPDETLIVCAQFRLHHLN---HNHPDNRTEFLQVLRNLEPKGVVLSENNTDCsctSCGDFATGFSRRVEYLWRFLDSSSAAF----KG 446 ****************************8...56666678*******************97763244569*******************7765....55 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r + Er++++ e+++++ ++ ++ +e +ekW er++++GF l+e++ ++a++llrk++ ++++r ee++g++ l Wk++p+ ++S W+ Achn050241 447 RESDERRVMEGEASKALLNSDEM----NEGKEKWCERMRRVGFAGQVLGEDTIDEARALLRKYDsNWEMRAEEKDGCVGLWWKGQPVSFCSLWK 536 55556666666688888888777....99***********************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.32 | 133 | 515 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-76 | 160 | 536 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MTLGESEPNT SSDHILDWLD SLEGSIPFLP PFLDDPYNSG QINGDHWWVE NQDLDPELVH 60 PSSTYFNNST STITTATSTT PPDLIPSNNF QPSDSSKKRK GSDNPAPKPS QSHRKNQNRR 120 NNEADDGDGV KRAVGGKKGS AKSAGNNCSN GNNREGRWAE QLLNPCAAAV TAGNLTRVQH 180 LLYVLHELAS PSGDANHRLA AHGLRALTHL LSSPVSSVSQ GPINFSSTKP QFFQKSLMRF 240 DEVSPWFMFP NKIANNSILQ ILSEQDQSRN LHILDIGVSH GVQWPTLLEA LSRRSGGAPP 300 LVRLTVVGAA TDHDRITDNP FVISPPGYSF TSQLLCYAKS ININLQINRL DNLPLQNLNA 360 EIINFSPDET LIVCAQFRLH HLNHNHPDNR TEFLQVLRNL EPKGVVLSEN NTDCSCTSCG 420 DFATGFSRRV EYLWRFLDSS SAAFKGRESD ERRVMEGEAS KALLNSDEMN EGKEKWCERM 480 RRVGFAGQVL GEDTIDEARA LLRKYDSNWE MRAEEKDGCV GLWWKGQPVS FCSLWKLGDE 540 SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-38 | 156 | 536 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 1e-38 | 156 | 536 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 1e-38 | 156 | 536 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028086747.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2R6R0F6 | 0.0 | A0A2R6R0F6_ACTCH; Nodulation-signaling pathway 1 protein | ||||
STRING | VIT_09s0002g01190.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-162 | GRAS family protein |
Publications ? help Back to Top | |||
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